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converting InterProScan results to genomic coordinates #9

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mictadlo opened this issue Feb 21, 2020 · 0 comments
Open

converting InterProScan results to genomic coordinates #9

mictadlo opened this issue Feb 21, 2020 · 0 comments

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@mictadlo
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Hi,
I ran interproscan.sh --cpu 10 --input $1 --seqtype p --iprlookup --pathways --goterms -d $2 --tempdir interproscan-dp-tmp and got the following output files:

  • augustus.hints_utr.aa.gff3
  • augustus.hints_utr.aa.tsv
  • augustus.hints_utr.aa.xml

Now I would like to load the results into JBrowse. However, the coordinates do not match the genomic coordinates. By any chance, do you have any scripts to convert InterPro scan results to genomic coordinates?

Thank you in advance,

Michal

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