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DESCRIPTION
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DESCRIPTION
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Package: ChIPexoQual
Type: Package
Title: ChIPexoQual
Version: 1.3.2
Author: Rene Welch, Dongjun Chung, Sunduz Keles
Maintainer: Rene Welch <welch@stat.wisc.edu>
Authors@R: c(person(given = "Dongjun", family = "Chung", role = "aut"),
person(given = "Sunduz",family = "Keles",role = "aut"),
person(given = "Rene", family = "Welch", role = c("aut",
"cre"), email = "[welch@stat.wisc.edu]"))
Description: Package with a quality control pipeline for ChIP-exo/nexus
data.
URL: https:github.com/keleslab/ChIPexoQual
BugReports: https://github.com/welch16/ChIPexoQual/issues
License: GPL (>=2)
Depends: R (>= 3.4.0), GenomicAlignments (>= 1.0.1)
Imports: methods, utils, GenomeInfoDb, stats, BiocParallel, GenomicRanges (>=
1.14.4), ggplot2 (>= 1.0), data.table (>= 1.9.6), Rsamtools (>=
1.16.1), IRanges (>= 1.6), S4Vectors (>= 0.8), biovizBase (>=
1.18), broom (>= 0.4), RColorBrewer (>= 1.1), dplyr (>= 0.5),
scales (>= 0.4.0), viridis (>= 0.3), hexbin (>= 1.27),
rmarkdown
Suggests: ChIPexoQualExample (>= 0.99.1), knitr (>= 1.10), BiocStyle,
gridExtra (>= 2.2), testthat
VignetteBuilder: knitr
biocViews: ChIPSeq, Sequencing, Transcription, Visualization,
QualityControl, Coverage, Alignment
RoxygenNote: 6.0.1