{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":744325977,"defaultBranch":"main","name":"malaria_proj","ownerLogin":"weissmanlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-01-17T04:11:48.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/14098092?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1705464885.0","currentOid":""},"activityList":{"items":[{"before":"c57f6301ec2e43336cdfb7a7d0a8c33e0704d8a4","after":"a4788cd3b88919777963b93c027b454b80d2ded2","ref":"refs/heads/main","pushedAt":"2024-05-02T04:33:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fix: better default params, track t_.01 on plots","shortMessageHtmlLink":"fix: better default params, track t_.01 on plots"}},{"before":"99f1a51ce8664401a8b2d4cecd0ea1fc844e1cf9","after":"c57f6301ec2e43336cdfb7a7d0a8c33e0704d8a4","ref":"refs/heads/main","pushedAt":"2024-04-24T23:08:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fix: recomb rate, arc4random feat: multirun append\n\nalso refactored to use std::accumulate when possible","shortMessageHtmlLink":"fix: recomb rate, arc4random feat: multirun append"}},{"before":"542dd17fc188fa26fb10f866cbfbfff5def7d9fa","after":"99f1a51ce8664401a8b2d4cecd0ea1fc844e1cf9","ref":"refs/heads/main","pushedAt":"2024-04-24T06:01:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fix: more robust rng","shortMessageHtmlLink":"fix: more robust rng"}},{"before":"27d1305f8c560507b27a98a5f2461c281bc0dd7f","after":"542dd17fc188fa26fb10f866cbfbfff5def7d9fa","ref":"refs/heads/main","pushedAt":"2024-04-24T05:55:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fix: rng bug","shortMessageHtmlLink":"fix: rng bug"}},{"before":"e42872a4be4937bfef2fcd7191feb3e170a94051","after":"27d1305f8c560507b27a98a5f2461c281bc0dd7f","ref":"refs/heads/main","pushedAt":"2024-04-23T23:00:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"refactor: standardization","shortMessageHtmlLink":"refactor: standardization"}},{"before":"378f68c43352f2584607d1ee900a9fcb8bc93803","after":"e42872a4be4937bfef2fcd7191feb3e170a94051","ref":"refs/heads/main","pushedAt":"2024-04-23T04:37:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"Delete data/.DS_Store","shortMessageHtmlLink":"Delete data/.DS_Store"}},{"before":"09b0bea7996f7dc40d07c7bd7222a9e1d9227800","after":"378f68c43352f2584607d1ee900a9fcb8bc93803","ref":"refs/heads/main","pushedAt":"2024-04-23T04:36:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"feat: plot noise in grey","shortMessageHtmlLink":"feat: plot noise in grey"}},{"before":"0e23ceb6b32bb79f42e97cdf32e8b1ce99604d9a","after":"09b0bea7996f7dc40d07c7bd7222a9e1d9227800","ref":"refs/heads/main","pushedAt":"2024-04-23T04:02:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"feat: better plotting, fix rng and cycling","shortMessageHtmlLink":"feat: better plotting, fix rng and cycling"}},{"before":"9146449ee9537cb91342c24e8b6249b15177c7f9","after":"0e23ceb6b32bb79f42e97cdf32e8b1ce99604d9a","ref":"refs/heads/main","pushedAt":"2024-04-22T01:38:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"feat: multi-run framework","shortMessageHtmlLink":"feat: multi-run framework"}},{"before":"43230467ecc92c89794e7590a158c1419c9d7a4c","after":"9146449ee9537cb91342c24e8b6249b15177c7f9","ref":"refs/heads/main","pushedAt":"2024-04-20T23:52:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"refactor: host id and debugging","shortMessageHtmlLink":"refactor: host id and debugging"}},{"before":"e72e35243453c894d89c4d8aa4783935393f41d3","after":"43230467ecc92c89794e7590a158c1419c9d7a4c","ref":"refs/heads/main","pushedAt":"2024-04-20T20:10:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fix: mutation bug, refactor code","shortMessageHtmlLink":"fix: mutation bug, refactor code"}},{"before":"f3cb39be0c68f207a5fca99d1b9016dd32286033","after":"e72e35243453c894d89c4d8aa4783935393f41d3","ref":"refs/heads/main","pushedAt":"2024-04-18T23:29:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fix: README formatting","shortMessageHtmlLink":"fix: README formatting"}},{"before":"a36b64a5008f52244e246fc380c569dd9c0a1d8d","after":"f3cb39be0c68f207a5fca99d1b9016dd32286033","ref":"refs/heads/main","pushedAt":"2024-04-18T23:27:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fix: README transmission cycle duration","shortMessageHtmlLink":"fix: README transmission cycle duration"}},{"before":"60bc42407104e04c24b7dbb2e1842122718d3cc6","after":"a36b64a5008f52244e246fc380c569dd9c0a1d8d","ref":"refs/heads/main","pushedAt":"2024-04-18T23:26:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fix: fitness values timespan, scientific notation","shortMessageHtmlLink":"fix: fitness values timespan, scientific notation"}},{"before":"b8ea62a398a06a944969fce0a3abc84b4cc0ba5a","after":"60bc42407104e04c24b7dbb2e1842122718d3cc6","ref":"refs/heads/main","pushedAt":"2024-04-18T01:09:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fix: updated README.md","shortMessageHtmlLink":"fix: updated README.md"}},{"before":"54df5ad3babf76b9b66ba5a596cc946c21002e21","after":"b8ea62a398a06a944969fce0a3abc84b4cc0ba5a","ref":"refs/heads/main","pushedAt":"2024-04-18T01:08:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"feat: linkage, all-pairs recomb model\n\nMade README.md up to date with model.\nPlease enter the commit message for your changes. Lines starting","shortMessageHtmlLink":"feat: linkage, all-pairs recomb model"}},{"before":"23e3a640e7dd75a30ba2e1ed19649233a40c966b","after":"54df5ad3babf76b9b66ba5a596cc946c21002e21","ref":"refs/heads/main","pushedAt":"2024-04-16T23:44:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"\"refactor: changed order of clone fitness data\"\n\nto match bit order in code.","shortMessageHtmlLink":"\"refactor: changed order of clone fitness data\""}},{"before":"bb2d4b1e1141dd40ea855311a5920ab5fdf466ce","after":"23e3a640e7dd75a30ba2e1ed19649233a40c966b","ref":"refs/heads/main","pushedAt":"2024-04-13T19:20:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"feat: improved plotting","shortMessageHtmlLink":"feat: improved plotting"}},{"before":"c70d88d730264eddc001cfe92b51ff5bd3872d39","after":"bb2d4b1e1141dd40ea855311a5920ab5fdf466ce","ref":"refs/heads/main","pushedAt":"2024-04-07T18:34:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"style: improved code clarity","shortMessageHtmlLink":"style: improved code clarity"}},{"before":"2c179de53b6e9dd5b1c1a7d017737ae5ed4639fc","after":"c70d88d730264eddc001cfe92b51ff5bd3872d39","ref":"refs/heads/main","pushedAt":"2024-04-04T20:12:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"refactor: deleted junk files","shortMessageHtmlLink":"refactor: deleted junk files"}},{"before":"e9f8bd202f2ea975cdcfc2d970f61a60ed628c79","after":"2c179de53b6e9dd5b1c1a7d017737ae5ed4639fc","ref":"refs/heads/main","pushedAt":"2024-04-04T20:11:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"refactor and cleaned up code","shortMessageHtmlLink":"refactor and cleaned up code"}},{"before":"0b68ded0714bb8b10a19ef53b080298c8affd143","after":"e9f8bd202f2ea975cdcfc2d970f61a60ed628c79","ref":"refs/heads/main","pushedAt":"2024-04-04T05:47:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"refactor, feat: plot prevalence and resistant clones","shortMessageHtmlLink":"refactor, feat: plot prevalence and resistant clones"}},{"before":"08d396f9d66415a95b782b773402ff2d95a87c6c","after":"0b68ded0714bb8b10a19ef53b080298c8affd143","ref":"refs/heads/main","pushedAt":"2024-04-03T23:55:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"feat:untreated hosts and CNVs/gene copies fix:MFTs\n\nadded column for untreated host data to csv file\nimplemented TREATED_PROP parameter\nadded back CNVs/gene copies clones\nfixed major bug with MFTs","shortMessageHtmlLink":"feat:untreated hosts and CNVs/gene copies fix:MFTs"}},{"before":"175febba48f162467c6a62677a32050af651d1c9","after":"08d396f9d66415a95b782b773402ff2d95a87c6c","ref":"refs/heads/main","pushedAt":"2024-03-22T04:46:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fixed model architecture equation","shortMessageHtmlLink":"fixed model architecture equation"}},{"before":"184789e6455ae284f518e6a8948c25c2d25432b3","after":"175febba48f162467c6a62677a32050af651d1c9","ref":"refs/heads/main","pushedAt":"2024-03-22T04:46:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fixed model architecture equation","shortMessageHtmlLink":"fixed model architecture equation"}},{"before":"113fcfd3f74dc28eab1256efbeb786969e07fb49","after":"184789e6455ae284f518e6a8948c25c2d25432b3","ref":"refs/heads/main","pushedAt":"2024-03-22T04:44:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fixed model architecture equation","shortMessageHtmlLink":"fixed model architecture equation"}},{"before":"1d73b451119308077aa0625d8a40bc290f491431","after":"113fcfd3f74dc28eab1256efbeb786969e07fb49","ref":"refs/heads/main","pushedAt":"2024-03-22T04:22:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fixed model architecture equation","shortMessageHtmlLink":"fixed model architecture equation"}},{"before":"88643e2b1b41f26752af614d93904fac57e0d5d4","after":"1d73b451119308077aa0625d8a40bc290f491431","ref":"refs/heads/main","pushedAt":"2024-03-22T04:21:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fixed model architecture equation","shortMessageHtmlLink":"fixed model architecture equation"}},{"before":"f51702c35816bc1b063fcc7bd4087b5245234fea","after":"88643e2b1b41f26752af614d93904fac57e0d5d4","ref":"refs/heads/main","pushedAt":"2024-03-22T04:16:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fixed model architecture equation","shortMessageHtmlLink":"fixed model architecture equation"}},{"before":"80bd7d765e6da591ff10c47bbe831dc5a98d5383","after":"f51702c35816bc1b063fcc7bd4087b5245234fea","ref":"refs/heads/main","pushedAt":"2024-03-22T04:14:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cjdjpj","name":"Cj Jiang","path":"/cjdjpj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115382069?s=80&v=4"},"commit":{"message":"fixed model architecture equation","shortMessageHtmlLink":"fixed model architecture equation"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEP2rw7AA","startCursor":null,"endCursor":null}},"title":"Activity ยท weissmanlab/malaria_proj"}