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850-ish non-virus species without higher taxonomy #5

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rorygibb opened this issue Jun 4, 2021 · 3 comments
Open

850-ish non-virus species without higher taxonomy #5

rorygibb opened this issue Jun 4, 2021 · 3 comments

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@rorygibb
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rorygibb commented Jun 4, 2021

Mainly helminths, protozoa, which returned fuzzy matches with NCBI. Currently their higher taxonomic categories are listed as "". Future issue to sort - requires manual harmonisation

@cjcarlson
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If you can drop a file of these I'd love to confirm whether this is the Julia case sensitive issue again, since - if they're returning fuzzy matches - that implies they haven't been run through a case insensitive pipeline?

@rorygibb
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rorygibb commented Jun 4, 2021

Will do. These missing ones are produced by vdict(), so it's the same issue I think?

@cjcarlson
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oh weird, vdict doesn't call julia. If you drop even a few of those names here I'll just dig in

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