Vercel users and github organisation problem

[NathanScott85]

Description

I have an issue where I use GitHub organizations to host private repositories, I deploy them using Vercel.
The main issue I am having is when I use:

vercel deploy --prod

This command deploys my APIs correctly but when I try using the standard git push method, the deployment works but the build output gives an internal 404: NOT_FOUND, also on the deployments it is showing up as two different users!

Am I missing something here is there something I need to do so that I can build my application without dealing with this issue?