vcfuniq.md

% VCFUNIQ(1) vcfuniq (vcflib) | vcfuniq (VCF filter) % Erik Garrison and vcflib contributors

NAME

vcfuniq

SYNOPSIS

vcfuniq

DESCRIPTION

List unique genotypes. Similar to GNU uniq, but aimed at VCF records. vcfuniq removes records which have the same position, ref, and alt as the previous record on a sorted VCF file. Note that it does not adjust/combine genotypes in the output, but simply takes the first record. See also vcfcreatemulti for combining records.

OPTIONS

Type: filter

      

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfuniq.cpp

LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.