Navigation Menu

Skip to content

Issues: vaquerizaslab/fanc

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

86 Open 98 Closed
86 Open 98 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

cooler version difference in parameters
#186 opened Apr 1, 2024 by NMaziak
2
fancplot layer: AttributeError: 'Bed' object has no attribute '_parameters'
#185 opened Apr 1, 2024 by jmsanper
1
fanc boundaries: AttributeError: 'Bed' object has no attribute 'close'
#183 opened Mar 18, 2024 by prometheusloong
2
Issue with installation
#182 opened Mar 13, 2024 by rlowe-altoslabs
2
is it SAM/BAM format?
#181 opened Feb 15, 2024 by gorliver
Per chromosome compartment strength with different eigenvectors
#180 opened Jan 31, 2024 by nponts
2
Issue with fancplot
#178 opened Dec 13, 2023 by TomSexton00
4
How to retrieve and save the compartment domain and values in python API
#177 opened Dec 8, 2023 by caragraduate
1
Handling 4DN .mcool files
#176 opened Dec 6, 2023 by wangfuzhou110
fanc compare return invalid value encountered in double_scalars
#175 opened Nov 30, 2023 by BenxiaHu
Issue with log transformation in fancplot -p square
#174 opened Oct 12, 2023 by kalavattam
Guidance on identifying and masking specific bins before balancing using FAN-C Python API
#173 opened Oct 11, 2023 by kalavattam
auto.py index out of range
#172 opened Oct 6, 2023 by alphataubio
1
WARNING Cannot find normalisation 'XXX'
#169 opened Sep 27, 2023 by moxqiang
3
fanc load for customized .hic file
#167 opened Sep 11, 2023 by caragraduate
3
Cleaning by removing 'Dangling ends' fragments only?
#164 opened Jul 28, 2023 by yermek2030
7
Duplicated rows in the TAD boundary file given by fac boundaries
#163 opened Jul 23, 2023 by ziyin96
4
Dispersed bin squares in Saddle plots for individual chromosomes
#162 opened Jul 23, 2023 by yermek2030
6
TestReadPairs.test_select fails
#161 opened Jul 15, 2023 by rekado
fanc aggregate data
#160 opened Jul 10, 2023 by shinohara-xiao
2
fanc auto ERROR: bowtie2 must be in PATH or defined on config file for mapping!
#159 opened Jul 10, 2023 by shinohara-xiao
1
About fanc insulation command
#157 opened May 12, 2023 by GleeenSIBS
fancplot / -region parameter : KeyError
#155 opened Apr 22, 2023 by matteozoia4
8
missing reads region has valid insulation score
#153 opened Apr 9, 2023 by caragraduate
4
Flaky TestReadPairs.test_filter_inward test
#150 opened Apr 2, 2023 by Apteryks
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.