compile-snappy-sage-9.0-linux.yml

# A conda environment to compile the latest SnapPy from source and use it with SageMath 9.0
#
# Once the environment has been created and activated, SnapPy
# can be compiled from the latest source and installed with
#
#     pip install https://github.com/3-manifolds/PLink/archive/master.zip
#     env CC=clang CXX=clang++ CFLAGS=-L/lib64 pip install https://github.com/3-manifolds/SnapPy/archive/master.zip
#
# Problem: OpenGL is picked up as /usr/include/GL/gl.h which tries to bring in <GL/glext.h>
#
# The conda environment uses, in particular:
#   * Tk 8.6.10 since it has Marc's fixes
#   * Cython so that the user can build snappy from source
# 
# Tested on Linux

name: compile-snappy-sage-9.0
channels:
  - conda-forge
  - pypi
  - defaults
dependencies:
  - _libgcc_mutex=0.1
  - _openmp_mutex=4.5
  - _r-mutex=1.0.1
  - alabaster=0.7.12
  - alsa-lib=1.1.5
  - appdirs=1.4.3
  - arb=2.17.0
  - attrs=19.3.0
  - automat=20.2.0
  - babel=2.8.0
  - bdw-gc=8.0.4
  - binutils_impl_linux-64=2.33.1
  - binutils_linux-64=2.33.1
  - bleach=3.1.1
  - brial=1.2.7
  - bwidget=1.9.14
  - bzip2=1.0.8
  - ca-certificates=2019.11.28
  - cairo=1.16.0
  - cddlib=1!0.94j
  - certifi=2019.11.28
  - cffi=1.14.0
  - chardet=3.0.4
  - clang=9.0.1
  - clangxx=9.0.1
  - click=7.0
  - cliquer=1.21
  - constantly=15.1.0
  - cryptography=2.8
  - curl=7.68.0
  - cvxopt=1.2.4
  - cycler=0.10.0
  - cypari2=2.1.1
  - cysignals=1.10.2
  - cython=0.29.15
  - decorator=4.4.2
  - defusedxml=0.6.0
  - docutils=0.16
  - dsdp=5.8
  - ecl=16.1.2
  - eclib=20190909
  - ecm=7.0.4
  - entrypoints=0.3
  - expat=2.2.9
  - fastcache=1.1.0
  - fflas-ffpack=2.4.3
  - fftw=3.3.8
  - flask=0.11.1
  - flask-autoindex=0.6.2
  - flask-babel=0.12.2
  - flask-oldsessions=0.10
  - flask-openid=1.2.5
  - flask-silk=0.2
  - flintqs=1.0
  - fontconfig=2.13.1
  - fplll=5.3.1
  - fpylll=0.5.1dev
  - freetype=2.10.0
  - fribidi=1.0.5
  - future=0.18.2
  - gap-core=4.10.2
  - gap-defaults=4.10.2
  - gcc_impl_linux-64=7.3.0
  - gcc_linux-64=7.3.0
  - gettext=0.19.8.1
  - gf2x=1.2
  - gfan=0.6.2
  - gfortran_impl_linux-64=7.3.0
  - gfortran_linux-64=7.3.0
  - giac=1.5.0.63
  - giflib=5.2.1
  - givaro=4.1.1
  - glib=2.58.3
  - glpk=4.65
  - gmp=6.2.0
  - gmpy2=2.1.0b1
  - graphite2=1.3.13
  - gsl=2.5
  - gxx_impl_linux-64=7.3.0
  - gxx_linux-64=7.3.0
  - harfbuzz=2.4.0
  - hyperlink=17.3.1
  - icu=64.2
  - idna=2.9
  - imagesize=1.2.0
  - iml=1.0.5
  - importlib_metadata=1.5.0
  - incremental=17.5.0
  - ipykernel=4.8.2
  - ipython=5.8.0
  - ipython_genutils=0.2.0
  - ipywidgets=7.5.1
  - itsdangerous=1.1.0
  - jinja2=2.10.3
  - jmol=14.29.15
  - jpeg=9c
  - jsonschema=3.0.0a3
  - jupyter_client=5.3.4
  - jupyter_core=4.6.3
  - kiwisolver=1.1.0
  - krb5=1.16.4
  - lcalc=1.23
  - lcms2=2.9
  - ld_impl_linux-64=2.33.1
  - libblas=3.8.0
  - libbraiding=1.0
  - libbrial=1.2.7
  - libcblas=3.8.0
  - libcurl=7.68.0
  - libedit=3.1.20170329
  - libffi=3.2.1
  - libflint=2.5.2
  - libgcc-ng=9.2.0
  - libgd=2.2.5
  - libgfortran-ng=7.3.0
  - libgomp=9.2.0
  - libhomfly=1.02r6
  - libiconv=1.15
  - liblapack=3.8.0
  - liblapacke=3.8.0
  - libllvm9=9.0.1
  - libopenblas=0.3.8
  - libpng=1.6.37
  - libsodium=1.0.17
  - libssh2=1.8.2
  - libstdcxx-ng=9.2.0
  - libtiff=4.1.0
  - libuuid=2.32.1
  - libwebp=1.0.2
  - libxcb=1.13
  - libxml2=2.9.10
  - linbox=1.6.3
  - llvm-openmp=9.0.1
  - lrcalc=1.2
  - lz4-c=1.8.3
  - m4ri=20140914
  - m4rie=20150908
  - make=4.3
  - markupsafe=1.1.1
  - matplotlib-base=2.2.5
  - maxima=5.42.2
  - metis=5.1.0
  - mistune=0.8.4
  - mpc=1.1.0
  - mpfi=1.5.4
  - mpfr=4.0.2
  - mpmath=1.1.0
  - nauty=2.6.11
  - nbconvert=5.6.1
  - nbformat=4.4.0
  - ncurses=6.1
  - networkx=2.4
  - notebook=5.7.8
  - ntl=11.3.2
  - numpy=1.18.1
  - olefile=0.46
  - openjdk=11.0.1
  - openssl=1.1.1d
  - packaging=20.1
  - palp=2.1
  - pandoc=2.9.2
  - pandocfilters=1.4.2
  - pango=1.42.4
  - pari=2.11.2
  - pari-galdata=0.0.20180411
  - pari-seadata-small=0.0.20090618
  - path=13.1.0
  - path.py=12.4.0
  - pathlib2=2.3.5
  - pcre=8.44
  - perl=5.26.2
  - pexpect=4.8.0
  - pickleshare=0.7.5
  - pillow=5.4.1
  - pip=20.0.2
  - pixman=0.38.0
  - pkg-config=0.29.2
  - pkgconfig=1.3.1
  - planarity=3.0.0.5
  - ppl=1.2
  - pplpy=0.8.4
  - prometheus_client=0.7.1
  - prompt_toolkit=1.0.15
  - psutil=5.7.0
  - pthread-stubs=0.4
  - ptyprocess=0.6.0
  - pyasn1=0.4.8
  - pyasn1-modules=0.2.7
  - pycparser=2.20
  - pygments=2.6.1
  - pyhamcrest=2.0.2
  - pynac=0.7.26
  - pyopenssl=19.1.0
  - pyparsing=2.4.6
  - pyrsistent=0.15.7
  - pysocks=1.7.1
  - python=3.7.6
  - python-dateutil=2.8.1
  - python3-openid=3.1.0
  - python_abi=3.7
  - pytz=2019.3
  - pyzmq=18.1.1
  - qd=2.3.22
  - r-base=3.6.2
  - ratpoints=2.1.3
  - readline=8.0
  - requests=2.23.0
  - rpy2=3.1.0
  - rubiks=20070912
  - rw=0.7
  - sage=9.0
  - sagelib=9.0
  - sagemath-db-combinatorial-designs=20140630
  - sagemath-db-conway-polynomials=0.5.0
  - sagemath-db-elliptic-curves=0.8.1
  - sagemath-db-graphs=20161026
  - sagemath-db-polytopes=20170220
  - sagenb=1.1.3
  - sagetex=3.4
  - scipy=1.4.1
  - sed=4.7
  - send2trash=1.5.0
  - service_identity=18.1.0
  - setuptools=46.0.0
  - simplegeneric=0.8.1
  - singledispatch=3.4.0.3
  - singular=4.1.1.p2
  - six=1.14.0
  - snowballstemmer=2.0.0
  - sphinx=1.8.5
  - sphinxcontrib-websupport=1.1.2
  - sqlite=3.30.1
  - suitesparse=5.6.0
  - symmetrica=2.0
  - sympow=2.023.3
  - sympy=1.5.1
  - tachyon=0.99b6
  - tbb=2020.1
  - terminado=0.8.3
  - testpath=0.4.4
  - three.js=105
  - tk=8.6.10
  - tktable=2.10
  - tornado=4.5.3
  - traitlets=4.3.3
  - twisted=18.9.0
  - tzlocal=2.0.0
  - urllib3=1.25.7
  - wcwidth=0.1.8
  - webencodings=0.5.1
  - werkzeug=1.0.0
  - wheel=0.34.2
  - widgetsnbextension=3.5.1
  - xorg-fixesproto=5.0
  - xorg-inputproto=2.3.2
  - xorg-kbproto=1.0.7
  - xorg-libice=1.0.10
  - xorg-libsm=1.2.3
  - xorg-libx11=1.6.9
  - xorg-libxau=1.0.9
  - xorg-libxdmcp=1.1.3
  - xorg-libxext=1.3.4
  - xorg-libxfixes=5.0.3
  - xorg-libxi=1.7.10
  - xorg-libxrender=0.9.10
  - xorg-libxtst=1.2.3
  - xorg-recordproto=1.14.2
  - xorg-renderproto=0.11.1
  - xorg-xextproto=7.3.0
  - xorg-xproto=7.0.31
  - xz=5.2.4
  - zeromq=4.3.2
  - zipp=3.1.0
  - zlib=1.2.11
  - zn_poly=0.9.2
  - zope.interface=4.7.1
  - zstd=1.4.4
  - pip:
    - fxrays==1.3.3
    - pypng==0.0.20
    - snappy-manifolds==1.1
    - spherogram==1.8.2