compile-snappy-compile-regina-sage-9.0-osx.yml

# A conda environment to compile the latest SnapPy and Regina from source and use it with SageMath 9.0
#
# Once the environment has been created and activated, SnapPy
# can be compiled from the latest source and installed with
#
#     pip install https://github.com/3-manifolds/PLink/archive/master.zip
#     pip install https://github.com/3-manifolds/SnapPy/archive/master.zip
#
# Similarly, Regian can be installed with
#
#     git clone https://github.com/regina-normal/regina
#     cd regina
#     mkdir build
#     cd build
#     cmake ..
#     make install
#
# (both require xcode command line tools which can be installed with
#  xcode-select --install).
#
# The conda environment uses, in particular:
#   * Tk 8.6.10 since it has Marc's fixes
#   * Cython so that the user can build snappy from source
# 
# Tested on Mac OS X 10.14.6

name: compile-snappy-compile-regina-sage-9.0
channels:
  - conda-forge
  - pypi
  - defaults
dependencies:
  - _r-mutex=1.0.1
  - alabaster=0.7.12
  - appdirs=1.4.3
  - appnope=0.1.0
  - arb=2.17.0
  - attrs=19.3.0
  - automat=20.2.0
  - babel=2.8.0
  - bdw-gc=8.0.4
  - bleach=3.1.1
  - boost=1.72.0
  - boost-cpp=1.72.0
  - brial=1.2.7
  - bwidget=1.9.14
  - bzip2=1.0.8
  - ca-certificates=2019.11.28
  - cairo=1.16.0
  - cctools=927.0.2
  - cddlib=1!0.94j
  - certifi=2019.11.28
  - cffi=1.13.2
  - chardet=3.0.4
  - clang=9.0.1
  - clang_osx-64=9.0.1
  - clangxx=9.0.1
  - clangxx_osx-64=9.0.1
  - click=7.0
  - cliquer=1.21
  - cmake=3.16.4
  - compiler-rt=9.0.1
  - compiler-rt_osx-64=9.0.1
  - constantly=15.1.0
  - cryptography=2.8
  - curl=7.68.0
  - cvxopt=1.2.4
  - cycler=0.10.0
  - cypari2=2.1.1
  - cysignals=1.10.2
  - cython=0.29.15
  - decorator=4.4.1
  - defusedxml=0.6.0
  - docutils=0.16
  - dsdp=5.8
  - ecl=16.1.2
  - eclib=20190909
  - ecm=7.0.4
  - entrypoints=0.3
  - expat=2.2.9
  - fastcache=1.1.0
  - fflas-ffpack=2.4.3
  - fftw=3.3.8
  - flask=0.11.1
  - flask-autoindex=0.6.2
  - flask-babel=0.12.2
  - flask-oldsessions=0.10
  - flask-openid=1.2.5
  - flask-silk=0.2
  - flintqs=1.0
  - fontconfig=2.13.1
  - fplll=5.3.1
  - fpylll=0.5.1dev
  - freetype=2.10.0
  - fribidi=1.0.5
  - future=0.18.2
  - gap-core=4.10.2
  - gap-defaults=4.10.2
  - gettext=0.19.8.1
  - gf2x=1.2
  - gfan=0.6.2
  - gfortran_impl_osx-64=7.3.0
  - gfortran_osx-64=7.3.0
  - giac=1.5.0.63
  - giflib=5.2.1
  - givaro=4.1.1
  - glib=2.58.3
  - glpk=4.65
  - gmp=6.2.0
  - gmpy2=2.1.0b1
  - graphite2=1.3.13
  - gsl=2.5
  - harfbuzz=2.4.0
  - hyperlink=17.3.1
  - icu=64.2
  - idna=2.9
  - imagesize=1.2.0
  - iml=1.0.5
  - importlib_metadata=1.5.0
  - incremental=17.5.0
  - ipykernel=4.10.0
  - ipython=5.8.0
  - ipython_genutils=0.2.0
  - ipywidgets=7.5.1
  - isl=0.19
  - itsdangerous=1.1.0
  - jansson=2.11
  - jinja2=2.10.3
  - jmol=14.29.15
  - jpeg=9c
  - jsonschema=3.0.0a3
  - jupyter_client=5.3.4
  - jupyter_core=4.6.3
  - kiwisolver=1.1.0
  - krb5=1.16.4
  - lcalc=1.23
  - ld64=450.3
  - libblas=3.8.0
  - libbraiding=1.0
  - libbrial=1.2.7
  - libcblas=3.8.0
  - libclang=9.0.1
  - libcurl=7.68.0
  - libcxx=9.0.1
  - libedit=3.1.20170329
  - libffi=3.2.1
  - libflint=2.5.2
  - libgd=2.2.5
  - libgfortran=4.0.0
  - libhomfly=1.02r6
  - libiconv=1.15
  - liblapack=3.8.0
  - liblapacke=3.8.0
  - libllvm9=9.0.1
  - libopenblas=0.3.8
  - libpng=1.6.37
  - libpq=12.2
  - libsodium=1.0.17
  - libssh2=1.8.2
  - libtiff=4.1.0
  - libuv=1.34.0
  - libwebp=1.0.2
  - libxml2=2.9.10
  - libxslt=1.1.33
  - linbox=1.6.3
  - llvm-openmp=9.0.1
  - lrcalc=1.2
  - lz4-c=1.8.3
  - m4ri=20140914
  - m4rie=20150908
  - make=4.2.1
  - markupsafe=1.1.1
  - matplotlib-base=2.2.4
  - maxima=5.42.2
  - metis=5.1.0
  - mistune=0.8.4
  - mpc=1.1.0
  - mpfi=1.5.4
  - mpfr=4.0.2
  - mpmath=1.1.0
  - nauty=2.6.11
  - nbconvert=5.6.1
  - nbformat=4.4.0
  - ncurses=6.1
  - networkx=2.4
  - notebook=5.7.8
  - nspr=4.20
  - nss=3.47
  - ntl=11.3.2
  - numpy=1.18.1
  - olefile=0.46
  - openjdk=11.0.1
  - openssl=1.1.1d
  - packaging=20.1
  - palp=2.1
  - pandoc=2.9.2
  - pandocfilters=1.4.2
  - pango=1.42.4
  - pari=2.11.2
  - pari-galdata=0.0.20180411
  - pari-seadata-small=0.0.20090618
  - path=13.1.0
  - path.py=12.4.0
  - pathlib2=2.3.5
  - pcre=8.44
  - perl=5.26.2
  - pexpect=4.8.0
  - pickleshare=0.7.5
  - pillow=5.4.1
  - pip=20.0.2
  - pixman=0.38.0
  - pkg-config=0.29.2
  - pkgconfig=1.3.1
  - planarity=3.0.0.5
  - popt=1.16
  - ppl=1.2
  - pplpy=0.8.4
  - prometheus_client=0.7.1
  - prompt_toolkit=1.0.15
  - psutil=5.7.0
  - ptyprocess=0.6.0
  - pyasn1=0.4.8
  - pyasn1-modules=0.2.7
  - pycparser=2.19
  - pygments=2.5.2
  - pyhamcrest=2.0.0
  - pynac=0.7.26
  - pyopenssl=19.1.0
  - pyparsing=2.4.6
  - pyrsistent=0.15.7
  - pyside2=5.13.2
  - pysocks=1.7.1
  - python=3.6.7
  - python-dateutil=2.8.1
  - python3-openid=3.1.0
  - pytz=2019.3
  - pyzmq=18.1.1
  - qd=2.3.22
  - qt=5.12.5
  - r-base=3.6.2
  - ratpoints=2.1.3
  - readline=8.0
  - requests=2.23.0
  - rhash=1.3.6
  - rpy2=3.1.0
  - rubiks=20070912
  - rw=0.7
  - sage=9.0
  - sagelib=9.0
  - sagemath-db-combinatorial-designs=20140630
  - sagemath-db-conway-polynomials=0.5.0
  - sagemath-db-elliptic-curves=0.8.1
  - sagemath-db-graphs=20161026
  - sagemath-db-polytopes=20170220
  - sagenb=1.1.3
  - sagetex=3.4
  - scipy=1.4.1
  - send2trash=1.5.0
  - service_identity=18.1.0
  - setuptools=45.2.0
  - simplegeneric=0.8.1
  - singledispatch=3.4.0.3
  - singular=4.1.1.p2
  - six=1.14.0
  - snowballstemmer=2.0.0
  - sphinx=1.8.5
  - sphinxcontrib-websupport=1.1.2
  - sqlite=3.30.1
  - suitesparse=5.6.0
  - symmetrica=2.0
  - sympow=2.023.3
  - sympy=1.5.1
  - tachyon=0.99b6
  - tapi=1000.10.8
  - tbb=2019.9
  - terminado=0.8.3
  - testpath=0.4.4
  - three.js=105
  - tk=8.6.10
  - tktable=2.10
  - tokyocabinet=1.4.48
  - tornado=4.5.3
  - traitlets=4.3.3
  - twisted=18.9.0
  - tzlocal=2.0.0
  - urllib3=1.25.7
  - wcwidth=0.1.8
  - webencodings=0.5.1
  - werkzeug=1.0.0
  - wheel=0.34.2
  - widgetsnbextension=3.5.1
  - xz=5.2.4
  - zeromq=4.3.2
  - zipp=3.0.0
  - zlib=1.2.11
  - zn_poly=0.9.2
  - zope.interface=4.7.1
  - zstd=1.4.4
  - pip:
    - fxrays==1.3.3
    - pypng==0.0.20
    - snappy-manifolds==1.1
    - spherogram==1.8.2