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Query: Mixed sample - separate reads? #267

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peflanag opened this issue Jun 3, 2020 · 2 comments
Open

Query: Mixed sample - separate reads? #267

peflanag opened this issue Jun 3, 2020 · 2 comments
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@peflanag
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peflanag commented Jun 3, 2020

Hi,

I'm not sure if this is possible but thought I would ask. I am working with mycobacteria and one of our samples is a mixed sample. I believe Karken can determine if samples are mixed and was wondering does it pick it up when you run Nullarbor? I am currently running a few samples to see. If it does, can you separate the reads? is it possible to separate reads in a mixed sample?

Cheers for any advice/tips!

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@tseemann tseemann self-assigned this Jun 3, 2020
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tseemann commented Jun 3, 2020

What species is mixed with what species?

@peflanag
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peflanag commented Jun 3, 2020

Hey, it’s a TB stain and mycobacterium avium complex.

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