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Overflow on RAM error message? #11

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tseemann opened this issue Mar 4, 2020 · 2 comments
Open

Overflow on RAM error message? #11

tseemann opened this issue Mar 4, 2020 · 2 comments
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@tseemann
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@tseemann
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tseemann commented Mar 4, 2020 

ERROR: could not allocate 18014398504767799 kb RAM
@tseemann tseemann added the bug Something isn't working label Mar 4, 2020
@tseemann tseemann self-assigned this Mar 4, 2020
@finngl
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finngl commented Nov 29, 2023

Is your comment an actual error message, or is it a suggestion for an error message?

I sometimes get confusing error messages like "ERROR: row 3 had 559 cols, expected 4000" on a input matrix that is completely correct, but with a large number of colums. However, if I reduce the number of colums enough, the error disappears and I get good output. I guess this is because cgmlst-dists runs out of memory.

@wessel-eijs
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Has there been an update on this bug (or is it something else)? I am currently trying to calculate the cgmlst-dists on a dataset of 55.000 isolates (rows) and 3002 loci (columns). I get the same error message as mentioned above with almost the same number.

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