/
_pkgdown.yml
149 lines (146 loc) · 2.64 KB
/
_pkgdown.yml
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url: https://tsahota.github.io/NMproject
template:
params:
bootswatch: flatly
google_site_verification: Asq9eKyn87Krpkza8Y-Y_XiS5V6eNXGAreGhOYcBKd0
docsearch:
api_key: be93a35b426aba9fa8e576efbb2011e7
index_name: NMproject
reference:
- title: "Configuration & setup"
- contents:
- check_installation
- setup_code_completion
- nm_tran_command
- find_nonmem
- NONMEM_version
- nm_default_fields
- nm_default_dirs
- overwrite_behaviour
- job_time_spacing
- title: "Project directory management"
- contents:
- nm_create_analysis_project
- setup_nm_demo
- run_all_scripts
- temp_files
- rmd_to_vignettes
- nm_dir
- is_nmproject_dir
- title: "Importing code"
- contents:
- code_library
- ls_code_library
- ls_scripts
- stage
- import
- search_raw
- title: "Data cleaning convenience functions"
- contents:
- read_derived_data
- write_derived_data
- exclude_rows
- make_OCC_every_dose
- title: "Core object"
- contents:
- new_nm
- child
- nm_getsetters
- data_path
- input_data
- nm_list_gather
- parent_run
- run_dir_path
- ctl_path
- simple_field
- map_nm
- is_nm
- completed_nm
- '%f>%'
- title: "NONMEM code manipulation"
- contents:
- apply_manual_edit
- nm_diff
- show_ctl
- dollar
- fill_input
- subroutine
- update_parameters
- init_theta
- init_omega
- init_sigma
- block-omega-sigma
- gsub_ctl
- comment_out
- ignore
- dollar_subroutine
- delete_dollar
- insert_dollar
- add_mixed_param
- remove_parameter
- rename_parameter
- target
- untarget
- ctl_contents
- title: "Execution"
- contents:
- run_nm
- nm_tran
- shiny_nm
- status
- status_table
- wait_finish
- wait_for
- is_finished
- is_successful
- parallel_execute
- sge_parallel_execute
- system_nm
- system_cmd
- kill_job
- wipe_run
- nm_getsetters_execution
- job_stats
- title: "NONMEM postprocessing"
- contents:
- show_out
- nm_render
- nm_list_render
- plot_iter
- decision
- rr
- nm_summary
- coef_widelong
- output_table
- nm_read_table
- nm_tree
- ofv
- cond_num
- omega_matrix
- covariance_matrix
- covariance_plot
- nmsave_plot
- nmsave_table
- param_cov_diag
- nm_output_path
- title: "Simulations"
- contents:
- convert_to_simulation
- ppc_data
- ppc_whisker_plot
- ppc_histogram_plot
- title: "Covariate modelling"
- contents:
- cov_cov_plot
- add_remove_covs
- test_relations
- covariate_step_tibble
- bind_covariate_results
- cov_forest_data
- cov_forest_plot
- psn_style_scm
- append_nonmem_var
- title: "Bootstrap"
- contents:
- make_boot_datasets
- make_xv_datasets