- Removed timing test
-
Removed reshape2 imports and replaced with tidyr v1.0.0.
-
Added
check_installation
for users to be able to verify installations (fixes #18). -
All closed form ADVAN/TRANS combinations added to the code library. Modified $ERROR so that log transformed DV and M3 models can be obtained by uncommenting lines.
-
The run monitor addin now uses object highlighting - useful for when objects are not in
.GlobalEnv
(e.g. they're in adata.frame
). -
Changed
run_nm()
to havethreads
argument and make use of ajob_time_spacing
option to stagger multiple jobs and prevent overloading of a server (resolves #28). -
Reorders arguments for
decision
so that auto decisions can be specified without explicitly referring to arguments -
Removed future package from suggests and
async
arguments fromnm_render*()
functions. -
Manual edits can now be performed on vector nm objects
-
Included
*map*_nm()
functions as equivalents topurrr::*map*_*()
functions. These returnnm_list
objects. -
Improvements to the
subroutine()
function and included package tests. -
Added
path
argument towrite_ctl()
so control file can be written to other locations. -
Added package hex sticker.
-
Added
covariance_matrix()
for extracting covariance matrices. -
Added
completed_nm()
for handling completed nonmem runs. -
Added
sge_parallel_execute_batch
for SGE cluster environments. -
Added support for "name [unit] :trans" type parameter comments.
-
Fixed resolve manual edit failure when directory change was responsible for failure.
-
RANMETHOD=3S2 changed to RANMETHOD=3S2P in code library and examples to improve parallel processing consistency of runs.
-
Replaced caching mechanism of
nm_render()
andnm_list_render()
with xfun. -
Fixed bug when OMEGAS have same names as THETAS.
-
Added ability to use NMproject-specific code completion snippets
setup_code_completion()
. Typingnew_nm
will set up parent object,child
will set up child object. -
fixed bug in Windows where R markdown templates weren't being produced.
-
fixed minor windows bug where addins were executing models.
-
run_nm()
checks for psn installation in first use of R session -
clean_tempfiles()
replacesclean_run()
- Added google verification and 'DocSearch'
-
Fixed failing CRAN checks in macOS systems.
-
Added run monitor RStudio Addin.
-
Revamped the manual edit interface. This is backwards incompatible. merge conflicts will now be flagged.
-
Resolve manual edit 'addin' for handling merge conflicts in manual edits (#17)
-
view_patch()
prints to console instead of opening window -
Better instructions on RStudio Addin usage.
-
Fixed bug were
nm_create_analysis_project
would fail in windows if using the home directory due to a mismatch between how '~' is interpreted by R andusethis
.
The first post CRAN release
-
Revamped the NMproject project creation template and
nm_create_analysis_project()
for greater customisability ability and removed dependence onoptions()
which was causing strange behaviour. -
Expanded analysis README template for new NMprojects to run analysis level tests on build. Useful for compliance checking.
-
Added
nm_pre_commit_hook()
andnm_pre_commit_hook()
for custom NMproject analysis projects -
Expanded model diagnostic rmarkdown template to include more 'xpose' plots.
-
Included an experimental
%f>%
pipe for applying functions elementwise to vector valued nm objects. -
Included
is_nmproject_dir()
, intended for package owners of dependent packages -
Renamed
nm_default_dir()
tonm_dir()
-
Removed
nm.cmd_default
option in favour of the more flexiblenm_default_fields
. See?nm_default_fields()
for help. -
decision()
usesusethis::ui_yeah()
for prompting rather thanreadline()
. -
stage()
hasfind_replace_dir_names
argument to handle custom NMproject directory structures.
-
Made
run_id
argument mandatory inchild()
. -
Added example code for first object creation in code library dialog boxes when a model file is imported
-
new_nm()
will now fail if user tries to use a run based on one in the Models. This is for safety as the Models directory should only contain NMproject generated code. -
The code library will not display
.Rroj
orREADME
files.
-
preview()
is now deprecated and removed in favour of the code library 'Addin' -
nm_default_dir
is now deprecated
This is the first CRAN release of NMproject. Here are the major changes here relative to 0.5.1:
-
Removal and deprecation of tidyproject as an NMproject dependency.
-
Project libraries are now handled with
renv
. -
Analysis project creation has been moved from tidyproject to NMproject with light wrappers around
usethis
project creation functionality and RStudio project templates. Analysis projects have a package-like structure. -
Expanded demo based on a theophylline pharmacometric analysis and new vignette based around same demo.
-
The code library has been moved to NMproject. New shiny interface to code library available via RStudio 'Addins'. The code library has been restructured to match NMproject analysis directory structure.
-
new_nm()
function to create parentnm_list
objects. This is mostly for creation of your first model. Subsequent models are generated with thechild()
function. -
New manual edit interface via RStudio 'Addins'. NMproject is now the only NONMEM interface (known to the author) that tracks manual edits to NONMEM code in the form of reusable patches.
-
Fully vectorised functions and compatibility of
nm_list
objects withdplyr
. -
Custom NMproject implementations of PsN's bootstrap, cross-validation, stepwise covariate selection, simulation-re-estimation, and PPCs have been added.
-
"overwrite behaviour" RStudio 'Addin' has been created to allow different behaviours when modifying and rerunning a previously executed run. The default is to ask for confirmation.
This is the last version of NMproject to be developed at AZ. It has is a developmental version of the newer "beta"" interface.
This is the last release of the alpha interface developed at AZ.