A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
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Updated
Mar 12, 2018 - HTML
A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
A QC pipeline for SVs calls based on coverage and SNP calls
Convenient interface for generating tiles from Aperio SVS format images
Histopathological image processing and segmentation
Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.
Utilities to generate a checkerboard and build multi-layer pyramidal .svs files from Scalable Vector Graphics images.
Anonymize different kinds of bio-medical data
lessampler is a Singing Voice Synthesizer
Code for gleason grading a whole slide in 1 minute or less
Simple prototype of converting whole slide image (WSI) to multiframe DICOM images
GUI wrapped around anonymise label for SVS and NDPI whole slide images
Linked-reads based structural variant caller with barcode indexing
A pipeline to segment tissue from the background in histological images
ndn-python-svs: NDN StateVectorSync protocol python library for syncing distributed real-time applications.
Custom HED and Table for Intunist Japanese
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