Lima - Demultiplex Barcoded PacBio Samples
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Updated
Dec 18, 2023 - R
Lima - Demultiplex Barcoded PacBio Samples
A modular single-molecule analysis interface
Burst analysis software for smFRET. **Moved to OpenSMFS organization**
Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.
Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data
Detection of Molecules plugin for ImageJ, Utrecht University
A simulator for single molecule FRET experiments of freely diffusing particles.
MATLAB package to analyze single-molecule FRET data
Data analysis for Ingargiola et al. PLOS ONE (2017) doi:10.1101/085027
mdtraj_fps ia a command line tool to calculate FRET observables form MD-trajectories
ASCAM is Advanced Single Channel Analysis for Mac (and others)
Single-moecule imaging and computation with RNA
single molecule tracking
Fitting DNA single-molecule force-extension curves in MATLAB
Single-molecule force spectroscopy calibration
Single Molecule Fluorescence Simulator Toolkit
Maximum likelihood fits for low photon count data - For active develeopment visit gitlab.peulen.xyz
A useful tool for working with Oxford Nanoimager microscope single-molecule localization data.
This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.
Matlab software for simulation of two-dimensional single particle tracking (SPT) data sets.
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