A useful tool for working with Oxford Nanoimager microscope single-molecule localization data.
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Updated
Mar 28, 2021 - Jupyter Notebook
A useful tool for working with Oxford Nanoimager microscope single-molecule localization data.
A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)
A GUI application to assist manual object tracking in 2D/3D time-lapse images
Bei Liu's personal website
Jupyter implementations of various features in the `misloc_package`, predicting mispolarization and mislocalization in plasmon-enhanced single-molecule imaging.
Python toolkit for 2D/3D image processing using CPU or GPU
Matlab software for simulation of two-dimensional single particle tracking (SPT) data sets.
All this is part of my Projektarbeit (student project) @ TU Wien 2021
MATLAB codes developed in Courtemanche lab at University of Minnesota for automating analysis of actin filament properties from single molecule microscopy images.
Python toolkit for 2D single-particle tracking (SPT) and reconstruction of super-resolution images.
SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.
Statistical analysis of single molecule trajectories. (NB: The Sojourner.Pro featuring machine learning analysis is in the making, sign up on sojourner website for release: also, I am open for freelancing till the end of the pandemic, checkout the website for details).
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