single-cell-rna-seq
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SCDC project, originally on: https://github.com/meichendong/SCDC. Support sparse matrix among other additions.
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Dec 1, 2021 - R
The code and jupyter notebooks to go along with the manuscript: Comparison of the Cellular and Molecular Atlases of the Macaque and Mouse Dorsal Horns
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Sep 2, 2021 - Jupyter Notebook
Resolve single-cell spational location via elastic net
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Oct 26, 2022 - R
sc-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)
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Apr 2, 2022
A scalable unsupervised learning of scRNAseq data detects rare cells through integration of structure-preserving embedding, clustering and outlier detection
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Jul 29, 2023 - Jupyter Notebook
computational modeling and analysis of the morphogenetic domain signalling networks regulating c. elegans embryogenesis
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May 26, 2022 - HTML
Deep Learning single-cell Identification and Annotation
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Oct 18, 2022 - Python
Sequence Treatment and Uiversel Determination of Error in scRNA-seq
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May 8, 2019
A summer workshop on single-cell (gen)omics and data analysis
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Aug 17, 2018 - HTML
Molecular tracking devices quantify in vivo antigen distribution and archiving
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May 6, 2021 - HTML
Topologically Overlapping Within-Cluster/Across-Batch DEGs/pathways
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Sep 29, 2022 - R
A R Shiny App for single-cell analysis
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Oct 16, 2023 - R
scRNA2BoNI - A general framwork to infer Boolean networks from scRNAseq data.
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Jan 29, 2024 - Python
We explore how to use scanpy and besca to analyse single-cell sequencing data
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May 19, 2020 - Jupyter Notebook
R scripts used to analyze single-nucleus RNA-seq data generated from in vitro differentiated pancreatic organoids, described in Huang, L. et al. 2021 (in press).
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Mar 17, 2021 - R
MarkerCount is a python3 cell-type identification toolkit for single-cell RNA-Seq experiments.
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Oct 21, 2023 - Jupyter Notebook
Collection of personal singularity container image definition files
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May 23, 2023
This repository contains the source code of the python shiny app which is recommended to be used for the downstream analysis of the output of the SIMBA🦁 pipeline.
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May 6, 2024 - Python
An analysis that once lived in greenelab/sc-cancer-hgsc/analyses/differential_expression/smart_QC.Rmd has morphed into a potential preprint, so I'm moving the analyses related to that here.
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Feb 11, 2021 - HTML
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