single-cell-rna-seq
Here are 384 public repositories matching this topic...
A set of functions built for analysis and visualization (color blindness friendly) of single-cell and bulk RNA-sequencing data
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Feb 25, 2019 - R
SCDC project, originally on: https://github.com/meichendong/SCDC. Support sparse matrix among other additions.
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Dec 1, 2021 - R
The code and jupyter notebooks to go along with the manuscript: Comparison of the Cellular and Molecular Atlases of the Macaque and Mouse Dorsal Horns
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Sep 2, 2021 - Jupyter Notebook
Resolve single-cell spational location via elastic net
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Oct 26, 2022 - R
sc-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)
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Apr 2, 2022
Snakemake workflow for the alignment, QC, and quantification of all types of 10x Genomics data
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Mar 3, 2023 - Python
RNA velocity is a high-dimensional vector that predicts the future state of individual cells on a timescale of hours.
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Jan 30, 2024 - Jupyter Notebook
Calibrated clustering via knockoffs for single-cell genomics
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Apr 6, 2024 - R
V-SVA: An R Shiny application for detecting and annotating hidden sources of variation in single cell RNA-seq data
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Mar 3, 2020 - R
Package for temporal deconvolution of bulk RNA-seq samples using SVI
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Oct 5, 2023 - Jupyter Notebook
A scalable unsupervised learning of scRNAseq data detects rare cells through integration of structure-preserving embedding, clustering and outlier detection
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Jul 29, 2023 - Jupyter Notebook
computational modeling and analysis of the morphogenetic domain signalling networks regulating c. elegans embryogenesis
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May 26, 2022 - HTML
Deep Learning single-cell Identification and Annotation
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Oct 18, 2022 - Python
An easy-to-use R wrapper function to run celltype identifiers for single-cell RNA-seq data
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Aug 13, 2023 - Jupyter Notebook
scTIM is a convenient tool for cell-type indicative marker detection based on single cell RNA-seq data
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Jun 3, 2020 - Python
Sequence Treatment and Uiversel Determination of Error in scRNA-seq
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May 8, 2019
A summer workshop on single-cell (gen)omics and data analysis
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Aug 17, 2018 - HTML
Topologically Overlapping Within-Cluster/Across-Batch DEGs/pathways
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Sep 29, 2022 - R
A R Shiny App for single-cell analysis
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Oct 16, 2023 - R
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