10xGenomics CellRanger - Slurm Job Partitioner (SJP)
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Updated
Apr 21, 2017 - Python
10xGenomics CellRanger - Slurm Job Partitioner (SJP)
Archived version of the zinbwave package. All future development will be done on https://github.com/drisso/zinbwave
Benchmarking R & Bioconductor performance working with large-scale single-cell data
Workshop for BioC 2018
Single cell trajectory detection
seuratOnline
<<------ Use SnapATAC!!
Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing
Reconstructing phylogenetic tree from noisy mutation profile of single cells
SCarborSNV is an efficient algorithm for phylogeny aware genotyping of single cell genomes, using dynamic programming and neighbor joining.
This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.
Analysis of Single Cell Expression, Normalization and Differential expression
Binary Factor Analysis: a dimensionality reduction tool for noisy, high throughput single cell genomic data
An R-based interface for loom files
Singularity image files (.sif) for single cell genomic analyses
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
🌾 Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
Single-Cell Data Science
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