SISTR (Salmonella In Silico Typing Resource) command-line tool
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Updated
Mar 14, 2024 - Python
SISTR (Salmonella In Silico Typing Resource) command-line tool
Various scripts for efficient processing of 10k Salmonella genomes
Machine learning methods to predict the anti-microbial resistance of Salmonella.
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
next-gen pangenome graphs for predictive genomics
Xenosiderophores produced by gut commensal fungi or present in the diet promote Salmonella enterica serovar Typhimurium growth and gut colonization
Fast assortment of Salmonella genomes into stable clusters using phylogenetic placement and kNN classifier
Salmonella typhi; analysis pipeline for Illumina reads
The AMRnet dashboard aims to make high-quality, robust and reliable genome-derived AMR surveillance data accessible to a wide audience
Bioinformatics tool for Salmonella WGS analysis
CGPS implementation of Genotyphi for assembled genomes.
Detection, extraction, and cluster assignment of S. Infantis pESI
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