LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models
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Updated
May 23, 2024 - Java
LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models
Github repository for "Sequential trait evolution did not drive deep-time diversification in sharks" article, published in Evolution
A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.
Repository for accumulating the complete pipeline of phylogenetic studies
A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.
Repositório para apresentação de código desenvolvido pelo grupo 3 para a UC Algoritmos para Análise Sequências Biológicas do Mestrado em Bioinformática, ano lectivo 23-24.
A Framework for Large Scale Phylogenetic Analysis
A Modular and Web-Based Tool for Phylogenetic Analysis
Genomic Epidemiology of SARS-CoV-2 in Pakistan
Tool for estimating the Felsenstein bootstrap support of phylogenetic trees
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Phylogenetic Inference and Data Visualization for Sequence-Based Typing Methods
Lab module and lectures for identifying phylogenetic history of SARS variants using R
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
Code of the article that describes the molecular epidemiology analyses of OsHV-1 virus by whole genome sequencing approaches in French shellfish growing areas.
Morphy releases are archived here. This project serves as the root folder for all of the source projects in Morphy.
GRAPPA: Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms
An R package to prepare data for phylogenetic analysis
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