Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
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Updated
May 30, 2024 - Python
Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
ImageJ convenience layer for N5
Main tasks for the Fractal analytics platform
Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
Package to organize high content screening experiments.
ITK IO for images stored in OME-Zarr format.
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.
nextflow DSL2 pipeline (leveraging ![bioformats2raw](https://github.com/glencoesoftware/bioformats2raw)/[raw2ometiff](https://github.com/glencoesoftware/raw2ometiff)) to convert almost any images to ome.tiff/ome.zarr
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