Here are
14 public repositories
matching this topic...
Updated
Jul 9, 2023
Nextflow
Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.
Updated
May 16, 2024
Python
Command line tool to convert MCD files to Zarr
Updated
Apr 29, 2024
Python
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
Updated
Jan 2, 2024
Python
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
Updated
Apr 23, 2024
Python
Updated
Apr 29, 2024
Python
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
Updated
Apr 18, 2024
Python
ITK IO for images stored in OME-Zarr format.
Package to organize high content screening experiments.
Updated
May 27, 2024
Python
Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
Updated
May 28, 2024
Python
Main tasks for the Fractal analytics platform
Updated
May 31, 2024
Python
ImageJ convenience layer for N5
Updated
May 28, 2024
Java
Bio-Formats image file format to raw format converter
Updated
May 29, 2024
Java
Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
Updated
May 30, 2024
Python
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