Interactive sensitivity analysis of my biochemical oscillator model. Uses GLMakie to allow fast and reactive resolving and plotting of the ODE solutions.
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Updated
May 21, 2024 - Julia
Interactive sensitivity analysis of my biochemical oscillator model. Uses GLMakie to allow fast and reactive resolving and plotting of the ODE solutions.
Mitochondria Retrograde (RTG) Signalling model
Multi-condensate state as a functional strategy to optimize the cell signaling output
Code for mitochondrial dynamics ODE manuscript.
R package for fitting kinetic models with one or more state variables to chemical degradation data
A MATLAB suite of initial value problems
ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.
Package for modeling glycolysis activity
Modeling the START transition in the budding yeast cell cycle
Going through the tutorials for integrating PyMC with ODEs
Going through the tutorial on Physics-informed Neural Networks: https://github.com/madagra/basic-pinn
Exact reduction of ODE models via linear transformations
Tools for numerical analysis of ODE and PDE in python
Python package for automatically generating Stan source code for hierarchical Bayesian ordinary differential equation models.
Code and data associated with the paper 'When does humoral memory enhance infection?' to be published in Plos Computational Biology
Chaotic attractors with python (Lorenz, Rossler, Rikitake etc.)
A set of codes in MATLAB for ODE reconstruction using least-square method
Numerical solution for the ODE of motion under gravity forces for n bodies and correspondent visualization
Use hypergraphs to create foodweb models which include non-trophic effects
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