Selected Topics in Visual Recognition using Deep Learning, NYCU. CodaLab competition - Instance Segmentation

Nucleia image segmentation with U-net...

ImageJ scripts for: (a) batch opening confocal files with two channels and merging them and (b) for a batch of confocal images with two channels, identifying nuclei as ROIs using one channel and quantifying the mean pixel intensity of each ROI using the other channel, and outputting results in Excel. Requirements and assumptions are in comments.

NUCLEI SEGMENTATION USING STARDIST AND PYTHON IN GOOGLE COLAB

WhoIsWho is Google Colab-based tool that aims to classify cells based on features related to their nuclei and their neighbours.

Implementation of image segmentation networks using pytorch.

Using Deep Learning techniques for nuclei segmentation. Data extracted from Kaggle competition 2018 Data Science Bowl

A PyTorch Implementation of the StarDist Nuclei Segmentation Architecture

Nuclei Segmentation using ResUNet

CompSegNet: An enhanced U-shaped architecture for nuclei segmentation in H&E histopathology images

Performs instance segmentation and classification of nuclei in Multi-Tissue Histology WSIs(generally 100k*100k pixels).

MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection

compact version of the official hovernet impl in pytorch

MICCAI-COMPAY-2021: An automatic nuclei image segmentation based on multi-scale split-attention u-net

Predicting breast cancer outcomes using ML.

Implementation of U_Net architecture for medical image segmentation purpose.

H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net

GradMix for nuclei segmentation and classification in imbalanced pathology image datasets: MICCAI 2022

The goal is to segment individual nuclei in microscopy images.

Feature extraction from GEOJson nuclei and tissue segmentation maps