GIMSAN: motif-finder with biologically realistic and reliable statistical significance analysis
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Updated
Jan 11, 2016 - C
GIMSAN: motif-finder with biologically realistic and reliable statistical significance analysis
Protein phosphorylation motif finder based on clustering analysis
Fast Motif Finder
Rapid and sensitive local alignment of genomic sequences employing motif anchors
Transceiver Framework: A framework for concurrent multi stage processing of data & MDP: An online motif detector and predictor embedded in the transceiver framework.
An integrative toolkit for detecting cell type-specific regulators
Python bindings for the TFM-Pvalue program.
Random Graph Generation
Scripts for motif assessment for HOCOMOCO v10/v11.
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
A deep learning approach to synthesize heterodimeric DNA motifs
This implementation is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Sequence Logos based on maximum values is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.
Sequence Logos using logarithms is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Sequence Logo - block style with axes (native Java Script) is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.
Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Bioinformatic approach to identify functional transcription factor binding motifs
A proof-of-concept library for motif analysis using MDL techniques.
Bioinformatic cis-motif-, H3K27me3 correlation- and GO-analysis conducted for my master's thesis
Pipeline webscraping to extract and download Solanum lycopersicum promotors
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