An integrative toolkit for detecting cell type-specific regulators
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Updated
May 21, 2020 - Python
An integrative toolkit for detecting cell type-specific regulators
Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Bioinformatic cis-motif-, H3K27me3 correlation- and GO-analysis conducted for my master's thesis
motif locator for plant resistance genes.
English Project
Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
Protein phosphorylation motif finder based on clustering analysis
This implementation is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Shiny app for screening for core promoter occurrences close to expressed transposons TSSs.
Transceiver Framework: A framework for concurrent multi stage processing of data & MDP: An online motif detector and predictor embedded in the transceiver framework.
Sequence Logo - block style with axes (native Java Script) is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.
A deep learning approach to synthesize heterodimeric DNA motifs
Sequence Logos using logarithms is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Motif analysis in gene regulatory networks
squid repository for manuscript analysis
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
Pipeline webscraping to extract and download Solanum lycopersicum promotors
Proteome-wide motif search for specific PTM(Post Translational Modification)
Bioinformatic approach to identify functional transcription factor binding motifs
Scripts for motif assessment for HOCOMOCO v10/v11.
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