Readers for medical imaging datasets

cardiac segmentation with 3d slicer

Sourcecode Compilation (medical related)

Code for automated brain tumor segmentation from MRI scans using CNNs with attention mechanisms, deep supervision, and Swin-Transformers. Based on my Master's dissertation project at Brunel University, it features 3 deep learning models, showcasing integration of advanced techniques in medical image analysis.

A simple modular U-Net library for medical image segmentation.

Abdominal Bleeding Detection using U-Net and CaraNet

Classifying Pneumonia images and normal lung images using RESNET50 and Customized CNN models.

Modular PyTorch U-Net model

Self-Supervised Learning with Swin UNETR for Segmentation of Organs at Risk and Tumor in PET/CT Images

[BSPC] The official code for "MHorUNet: High-order spatial interaction UNet for skin lesion segmentation".

Script to run train 3D CNN to predict tumour region-of-interest from 3D RSOM images.

Code for the paper "Effect of the output activation function on the probabilities and errors in medical image segmentation"

Tensorflow based framework for 3D-Unet with Knowledge Distillation

Segmentation of a small target (cancer) in a large image

This repository is an implementation of the paper "Trustworthy Medical Image Segmentation with improved performance for in-distribution samples" published in Neural Networks.

ScanHippoHealth: MRI segmentation using 3D-Unet on Medical Segmentation Decathlon data. Flask app with secure authentication, predicting and displaying six slices of input MRI alongside masks for precise hippocampus segmentation. Contributions welcome to enhance medical image analysis for better diagnostics.

[Medical Physics, 2021] Medical Image Segmentation Based on Attention mechanism(Fine-Tune for natural image[semantic/instance] segmentation)

Alternate Diverse Teaching for Semi-supervised Medical Image Segmentation

Iterative Vertebrae Segmentation - VerSe dataset

Unofficial PyTorch implementation of SA-UNet