Workflow for generating regular LC-MS data from the ones acquired in MRM mode
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Updated
Apr 1, 2017
Workflow for generating regular LC-MS data from the ones acquired in MRM mode
Experimental version of the MSstats package
Reproducibility repo for Shashikadze et al. "Structural and proteomic repercussions of growth hormone receptor deficiency on the pituitary gland – lessons from a translational pig model".
Extensions to use the cross-linking tool Scout with other software.
Java API for the extraction and management of MIAPE documents from standard proteomics data files
A software for importing spectral data from Thermo RAW files to binStack format usable by QuiXoT.
Analysis of AP-MS data
A Directed Acyclic Word Graph built for searching mass spectrometry data agains a protein database
The TLC-MS_manager is an open-source software to control the autoTLC-LC-MS interface.
Script for quantification of glucosaminoglycans (GAGs) based on Proteome Discoverer output, with web-interface powered by Bokeh
Repository dedicated to the Signal Processing of Quadrupole Mass Spectrometry:
Strategies for increasing the depth and throughput of protein analysis by plexDIA. The code is distributed by an MIT license.
Python and R scripts with examples demonstrating the conversion of IM-MS raw data to CCS/z space.
Code used for processing proteomics data associated with the publication by Yan et al., submitted to Nature Communications in 2024
Python library for fuzzy comparison of mass spectrum data and other Python objects
Removing unwanted variation in mass spectrometry data with missing values
SVM-based multiclassification approach for cancer detection using exosome mass spectrometry data
A Scala library specializing in stream processing of mzXML files, based on FS2
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