Collection of scripts for running data processing of light sheet data
-
Updated
May 21, 2019 - Julia
Collection of scripts for running data processing of light sheet data
Bei Liu's personal website
Measuring laser intensity underwater in a sample chamber with an open-hardware solution
Matlab app to destripe, using Pierre Weiss VSNR, and deshake, using Guizar-Sicairos, Thurman, and Fienup Efficient subpixel image registration algorithms
Crown-like Structure Detection and Segmentation in 3D Light-sheet Microscopy Imaging with Mask R-CNN
cells activity, voxel_to_volume in tissue conversion, density and stats
Stripe artifacts elimination of LSFM images using deep learning method
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
A fully open-source system for prospective optical gating in 3D fluorescence light sheet cardiac imaging
Python code for merging and refinement of detected neurons in large 3D stacks
Vectorial ray tracing software for light-sheet microscopes
Python toolkit for 2D/3D image processing using CPU or GPU
Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.
navigate - open source light-sheet microscope controls
Add a description, image, and links to the light-sheet-microcopy topic page so that developers can more easily learn about it.
To associate your repository with the light-sheet-microcopy topic, visit your repo's landing page and select "manage topics."