libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.
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Updated
Apr 21, 2024 - C
libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.
Succinct Data Structure Library 3.0
Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]
Induced Suffix Array and LCP construction based on the SAIS algorithm.
Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]
External memory BWT and LCP computation for sequence collections with applications [WABI'18, AMB 2019]
msufsort parallel suffix array construction algorithm
Algorithm design course in my forth semester of university
Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]
Burrows-Wheeler transform and LCP array construction in constant space [IWOCA'15, JDA 2017]
A lightweight suffix-sorting library enhanced with LCP construction
Bioinformatics course project: Computing the LCP array based on BWT
Disk-based approach to compute the BWT and the LCP of a set of strings
Data Structures naively implemented in Kotlin for learning purpose
Multi-threaded approach to compute the BWT and the LCP array of a set of strings
Python C module for creating suffix, LCP and BWT arrays with UTF-8 text.
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