This code calculates 3D system of Langevin equations describing behaviour of nuclear shape during fission process
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Updated
Nov 23, 2023 - Roff
This code calculates 3D system of Langevin equations describing behaviour of nuclear shape during fission process
Well-tempered metadynamics applied to Langevin field-theoretic simulations of diblock copolymers on CPUs (https://www.tbeardsley.com/projects/lfts/wtmd)
Multi-condensate state as a functional strategy to optimize the cell signaling output
Unbiased Estimation using Underdamped Langevin Dynamics (ULD)
Python scripts to analyze and visualize the data presented in the research article: "The maximum solubility product marks the threshold for condensation of multivalent biomolecules".
Well-tempered metadynamics applied to Langevin field-theoretic simulations of diblock copolymers on the GPU (https://www.tbeardsley.com/projects/lfts/wtmd)
Langevin Field-Theoretic Simulation of Diblock Copolymers on the GPU (https://www.tbeardsley.com/projects/lfts/fts_gpu)
Includes C++ code to run Markovian Langevin equations in units compatible with the dcTMD correction scripts available at www.moldyn.uni-freiburg.de/software/software.html. In addition, a jupyter notebook can be found which estimates the error of rates at 300 K from T-boosting calculations.
Cambridge Surface Sciences Group - Summer Project 2020
Python module for the evaluation of probability densities and exit rates in a tubular ensemble
Python and Shell scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of biomolecular condensates"
Langevin dynamics simulation of bacteriophage-bacteria interaction
Advanced machine learning lab
Variationally enhanced sampling for single-particle langevin dynamics with neural network bias potentials and path collective variables. Based on OpenMM + PyTorch.
Bayesian Neural Network (BNN) implementations based on Langevin Dynamics and tested on real-world data
Course project for SJTU CS385: Machine Learning, advised by Prof. Quanshi Zhang, where I implemented many algorithms from scratch for face recognization and detection.
A fork of ESPResSo by Bogdan Tanygin
A simple (PI)MD code for 1D systems
Langevin Field-Theoretic Simulations (L-FTS) of Diblock Copolymers on CPUs (https://www.tbeardsley.com/projects/lfts/fts_gpu)
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