Fulgor is a fast and space-efficient colored de Bruijn graph index.
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Updated
Apr 3, 2024 - C++
Fulgor is a fast and space-efficient colored de Bruijn graph index.
K-mer counting algorithms and count-data utilities for the BioJulia framework
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
counts k-mers, written in rust
Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
Very large scale k-mer counting and analysis on Apache Spark.
Evaluation of Statistical Linear Models for Genome Virus Classification
fast and comprehensive k-mer counting package
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
Benchmarks and evaluation scripts for the Fulgor index.
Analysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022
Convert python string to hashed kmers and back again
The generation of a kmers dataset that is associated with multiple gene sequences and the further manipulation of this generated dataset are the main contents of the current project.
DNA CLASSIFICATION
[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE
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