Server for the PDD platform.
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Updated
Dec 10, 2018 - Scala
Server for the PDD platform.
A suite of MATLAB scripts for simulating little brown bat population dynamics under a variety of white-nose syndrome control strategies.
A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. Our pipeline is built upon the BEAST2 and TransPhylo software.
Host site for the IDE modelling in R course, Ankara 2023
[OBSOLETE; USE EPICSPATIAL INSTEAD] An epidemic modelling framework for all resolutions of gridded and polygon spatial data
An optimised implementation of the tau statistic (relative prevalence ratio form), originally from R's IDSpatialStats package.
NACef (Community-Acquired Pneumonia, Endotypes and Phenotypes) is a single-center dataset that includes clinical information from 768 patients diagnosed with Community-Acquired Pneumonia (CAP) at Clinica Universidad de La Sabana, Colombia.
This package provides the data used in the Health Metrics and the Spread of Infectious Diseases with R book
A Susceptible-Infected-Vaccinated Model for Influenza Infection Dynamics.
Special repository containing the profile directory of JuliaEpi.
Analytic code for Harish et al. 2023 PLOS Global Public Health
An R package and web application for estimating the basic reproduction number of infectious diseases.
Studying the effect of infectious epidemics on scholarly research
Disease Modeling Workshop, UNIMAS
Undergraduate course on Microbiology
Personal web site
This repository contains the risk model function of the disease model in virbrio infections and how can be modeled to estimate the attributable rates
The scripts to reproduce the analysis of the HPI prediction paper
the peptide immune annotator pipeline (PIA-P) a collection of bash and Python scripts used running peptide HLA interaction from a variety of inputs
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