an attempt to incorporate BLASTp into BUSCO
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Updated
Apr 14, 2017 - Python
an attempt to incorporate BLASTp into BUSCO
Backup an apollo instance to a git repository
Donut: automated Circos visualization of multiple fasta files within a docker image
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines; I was a developer on this project at The Institute for Genomic Research/J. Craig Venter Institute from 2005 to 2008.
Toolkit for handling genome annotations in various formats. Python3.
LeishDB is a database for genomic annotation of Leishmania organisms. Currently, it stores data related to coding genes and non-coding RNAs from L. braziliensis. The website is
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
a_inornata research project
Linked Data Platform for Animal Breeding & Genomics
🐳 Apollo 2.X Docker Image
Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
ODG: Omics Database Generator - Integration toolkit for -omics data
Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.
Pipeline for the unsupervised clustering of homologous RNA structure motifs from sequencing data.
Pipelines for gene and TE annotation of pangenomes.
SLURM-ready bash scripts to run the complete REPET pipeline
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