A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
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Updated
May 27, 2024 - R
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
An R package to plot interactive three-way differential expression analysis
Differential Expression Analysis tool box R lang package for omics data
Approaches to identify Differential Rhythmicity
SPOT - Swift Profiling Of Transcriptomes - a shiny app for gene ranking according to user-defined expression profiles
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
Difference test with Gene expression by permutation method( by T-test and median test)
R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.
Here, we describe and provide an RNA-Seq analysis of a RIP assay to understand the mechanism of AML del(9q) progression. (Ali T. Abdallah)
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
Method of Combined P-value to identify Differential Expressed Gene in dataset
Bioinformatics - Differential Expression Analysis
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
Differential gene expression analysis of Nannochloropsis oceanica growth with or without beneficial/harmful bacteria.
MICTI- Marker gene Identification for Cell Type Identity
Multi-omics differential expression and integration using PPI networks
Differential gene expression analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal is to perform analysis of RNA-Seq data.
In this lab we will perform a differential expression analysis starting from scratch. Doxorubicin is a commonly prescribed cancer drug, but one of its side effects is cardiotoxicity. This drug damages heart cells by binding to the protein topoisomerase-II beta, or Top2b.
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
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