Quantitative Fluorescent Speckle Microscopy
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Updated
Jun 20, 2023 - MATLAB
Quantitative Fluorescent Speckle Microscopy
Analysis of simulated cell microtubules.
ImageJ macros for quantitative analysis of platelet alpha-granule SIM imaging as described in Swinkels and Hordijk et al (JTH, 2023)
Quick-Start for life scientists willing to use Matlab (for fluorescence microscopy, mass spectrometry, x-ray crystallography, single-particle electron microscopy, kinetics ...).. No background in programming is required.
Analysis scripts for the manuscript "Spindle checkpoint silencing at kinetochores at submaximal microtubule occupancy" by Etemad et al. "
Code associated with The Digital Cell
Python scripts to quantiatively describe Arp2/3 complex organization on travelling Actin Waves
NLP on biology paper abstracts
PhD thesis: Molecular feedback and self-organisation in the PAR polarity network
Analyze_Blebs is a semi-automated ImageJ/FIJI-based plugin for analysis of blebbing cells designed for users at all experience levels and blebs of all types.
GPU-accelerated solver of isotropic, active-reactive fluid equations, in 2D.
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Submission of Human Protein Atlas - Single Cell Classification on Kaggle 2021. A weakly supervised multi-label classification problem.
This is a website for visualizing the processes in the field of cytology.
Project for the Applied Machine Learning (EI70360) class at TUM Summer Semester 2023.
Complete analysis code for Bland et al., 2024
Simulate a system of linear filaments
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