ImageJ and Fiji Plugin for fast, variational 1D alignment of multichannel linescan data
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Updated
Apr 15, 2021 - Java
ImageJ and Fiji Plugin for fast, variational 1D alignment of multichannel linescan data
Spike inference algorithm using frequency-domain FRI framework
2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
CalciumImaging analysis matlab pipeline for suite2p outputs
Fully automated pipeline for calcium imaging analysis. (Description updated on Feb.12 2024)
Repository for the article "Distributed chromatic processing at the interface between retina and brain in the larval zebrafish", Guggiana et al. 2021, Curr. Bio.
A collection of useful methods for handling, processing, and visualizing calcium imaging data.
Calcium signal processing algorithm for automated analysis of intracellular calcium responses
Scripts for extraction and analysis of widefield calcium data from awake behaving mice.
PKGBUILD of CaImAn for Archlinux
🧠 Adaptive Platform for Neuroscience Experiments
repository of the project team 044-Armored-newt-with-lasers from Neuromatch Academy 2020
[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.
A lab rotation with the systems neuroscience lab, University of Tuebingen, where we tested whether color contrast contributed to encoding motion in direction selective cells of the zebrafish optic tectum.
Toolbox for fast, variational 1D alignment
Code to analyze calcium imaging data in Algamal et al. 2022, doi: https://doi.org/10.1101/2022.04.27.489759
Data codes and analysis of the added buffer approach with beta-escin perforated patch
"ViNe-Seg: A deep-learning tool for semi-automatic neural soma segmentation and subsequent analysis in a user-friendly interface"
Experiment automation for Coherent's Monaco Laser
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