libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.
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Updated
Apr 21, 2024 - C
libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.
A string library
This repository contains all the algorithms implementation & problems solution, assignment solution, Interview question solution & other related materials (Slides, Resources) related to Princeton University algorithms Part I & II course at COURSERA
Accurate, resource-frugal and deterministic DNA sequence classifier.
This repository contains all the solutions of assignments, starter files and other materials related to this specialization.
Burrows-Wheeler Transform and FM-index in golang
A compression tool based on the Burrows-Wheeler Transform method.
A parallel implementation of the bzip2 data compressor in python, this data compression pipeline is using algorithms like Burrows–Wheeler transform (BWT) and Move to front (MTF) to improve the Huffman compression. For now, this tool only will be focused on compressing .csv files, and other files on tabular format.
Reversible permutation of the characters of a string, which can be used for lossless data compression based on block sorting.
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
A simple text compressor.
External memory BWT and LCP computation for sequence collections with applications [WABI'18, AMB 2019]
Algorithm design course in my forth semester of university
msufsort parallel suffix array construction algorithm
Fast and Strong Burrows Wheeler Model
Computing the Lyndon Array in linear time [JDA 2018, SPIRE'19]
DNA Sequencing 1 Top Coder Data Science Marathon Match
A New Approach for Efficient Sequential Decoding of Static Huffman Codes
These are implementation principles of some bioinformatics algorithms in Java
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