DNA Sequencing 1 Top Coder Data Science Marathon Match
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Updated
May 7, 2016 - C++
DNA Sequencing 1 Top Coder Data Science Marathon Match
A compression tool based on the Burrows-Wheeler Transform method.
Portable Multithreaded Burrows-Wheeler Transform + Run Length Encoding Compressor/Decompressor
A simple text compressor.
Computational Biology Assignments
Bioinformatics course project: Computing the LCP array based on BWT
These are implementation principles of some bioinformatics algorithms in Java
Text compression using Huffman Coding; enhanced using Burrows-Wheeler Transforms and other algorithms.
Basic seed-and-extend DNA sequence read aligner
Reversible permutation of the characters of a string, which can be used for lossless data compression based on block sorting.
Burrows-Wheeler transform and LCP array construction in constant space [IWOCA'15, JDA 2017]
Fast and Strong Burrows Wheeler Model
Algorithms to compute the Burrows-Wheeler Similarity Distributions [SPIRE'18, TCS 2019]
Python C module for creating suffix, LCP and BWT arrays with UTF-8 text.
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
Bilkent University CS 481 Bioinformatics Algorithms assignments
Python implementation of the Burrow Wheeler Algorithm with a GUI
Repository for the master course Genomic IT at the School of Electrical Engineering
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