Repository for the master course of Genome Informatics at the School of Electrical Engineering in Belgrade.
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Updated
May 26, 2021 - Jupyter Notebook
Repository for the master course of Genome Informatics at the School of Electrical Engineering in Belgrade.
DNA Sequencing 1 Top Coder Data Science Marathon Match
Various algorithms and data structures on strings
Project Scientific Programming Python
Implement and compare 2 pattern matching algorithms for genome mapping, one using suffix array and the other using Burrows-Wheeler Transform
Portable Multithreaded Burrows-Wheeler Transform + Run Length Encoding Compressor/Decompressor
Programming assignments of BIO314 @ IISER-P
Text compression using Huffman Coding; enhanced using Burrows-Wheeler Transforms and other algorithms.
Python C module for creating suffix, LCP and BWT arrays with UTF-8 text.
The code done for the completion of coursera course, Algorithms on Strings. --> Code completed in python only.
Web App: Generate suffix array, Burrows-Wheeler transform, and FM indices for input strings Translate DNA sequences into their corresponding protein sequences
My CS Bachelor Thesis (Summer 2022)
Repository for the master course Genomic IT at the School of Electrical Engineering
Zip and unzip files using Huffman coding with Burrows Wheeler and Move To Front (BW and MTF are only applied to small files)
This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.
A test GitHub repository for a set of client/server python scripts (as part of the Scientific Programming class).
Implementation of the Burrows-Wheeler Transform in Go
Burrows-Wheeler transforms steps visualization
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