A program used to find indels on target gene edited by CRISPR/Cas9
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Updated
Apr 18, 2017 - Python
A program used to find indels on target gene edited by CRISPR/Cas9
This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.
A typesafe Scala BLAST API
Scripts to run benchmarks of BLAST and PLAST on a supercomputer
Container for blastn and Jupyter notebook
Demo of blastn tool for bioinformatics
Obsolete!! Begin to turn to PrimerServer2
Microsoft Azure HPC & Big Compute
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc).
omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…
PhylUp - a python package to automatically generate alignments (or update alignments and phylogenies) using local sequences or a local Genbank database while controlling for the number of sequences per OTU.
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
A beginner’s guide to Bioinformatics
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
DNA barcoding analysis pipeline
Parser of BLAST results
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