an assortment of bioinformatics inspired Python scripts
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Updated
Apr 15, 2017 - Python
an assortment of bioinformatics inspired Python scripts
FASTA file parser to extract or pipeline amino acid sequences.
Coord2gene is a simple Python script that converts genomic coordinates to gene names. Useful for mapping SNPs to genes, and optimized for speed.
This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.
Extract unmapped read fragments from a sequence alignment map by evaluating it's concise idiosyncratic gapped alignment reports (CIGARs)
piRNA cluster prediction and analysis framework
A simple Perl script to compute DeltaESRSeq to predict exon skipping induced by exonic variants
Python implementation of SigProfiler
Fast and Accurate Approach of Structural Variations Detection for Short DNA fragments
Bacterial Surveillance platform, focused on QC in Denmark
A tool for predicting lncRNA-protein interaction probability from sequences.
Data Viewer in Terminal for Bioinformatician
Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4
A tool for speciating M. tuberculosis isolates from WGS
An assembly language operating system for the Raspberry Pi Zero to identify genes in a DNA sequence.
Simplified Bioinformatics Module
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