cialab/DeepSlides fork to make it work with newer Python libraries.
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Updated
Dec 12, 2021 - Python
cialab/DeepSlides fork to make it work with newer Python libraries.
Scripts to estimate distances from PICT
Fiji macro that splits and merges multi-dimensional TIFFs.
Open Call #1: Segmentation and Tracking of Epithelial Cells
Encyclopedia of helper scripts to make 3D and 4D images processing easy.
Python code that I used in my blog posts on the Zarr file format.
Ai4Life Open Call #1 - Project #3, semantic segmentation of kidney and heart tissue
A suite of tools for analyzing large scale confluent FUCCI experiments
This is the repository for an image-processing focussed self-taught course with a slight focus on bioimage analysis.
This project aims to analyze the early infection (LT signal) and late expression (VP1) after infection with HBdMEC BK virus. The goal is to quantify the amount of signal inside the nucleus in the green and red channels over time.
Code for the article In toto imaging and reconstruction of post-implantation mouse development at the single-cell level
The IPython notebook contains the questions as well as the related code. Only numpy has been used.
Open Call #1: Murine Skeletal Muscle Analysis
Simple devices and software to facilitate microscopy, electrophysiology, and microbiology techniques for systems neuroscience research. Easy to fabricate and use with low-cost 3D Printers.
MRI ImageJ related python (jython) module.
Quantifying the dynamics of long-range cell-cell mechanical communication paper code
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