MRI ImageJ related python (jython) module.
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Updated
Sep 29, 2020 - Python
MRI ImageJ related python (jython) module.
CaMOS, a GUI for analysis of multimodal neuroscience datasets.
Source code and workflow protocols for SOCR 3D Cell Morphometry Project
Quantifying the dynamics of long-range cell-cell mechanical communication paper code
A Matlab pipeline for spatiotemporal quantification of monolayer cell migration. The repository includes Matlab source code. This repository is part of the book series "Neubias Bioimage Analysis". The analysis pipeline includes segmentation, velocity measurements, kymographs and multi-dimensional representations and PCA of wound healing assays.
cialab/DeepSlides fork to make it work with newer Python libraries.
Scripts to estimate distances from PICT
Fiji macro that splits and merges multi-dimensional TIFFs.
Image data and Python scripts for the course on Bioimage analysis with Napari
Open Call #1: Segmentation and Tracking of Epithelial Cells
Encyclopedia of helper scripts to make 3D and 4D images processing easy.
Python code that I used in my blog posts on the Zarr file format.
Ai4Life Open Call #1 - Project #3, semantic segmentation of kidney and heart tissue
A suite of tools for analyzing large scale confluent FUCCI experiments
This project aims to analyze the early infection (LT signal) and late expression (VP1) after infection with HBdMEC BK virus. The goal is to quantify the amount of signal inside the nucleus in the green and red channels over time.
PhD dissertation: Methods for Automated Neuron Image Analysis candidate: Miroslav Radojevic Publisher: Erasmus University ISBN 978-94-6361-204-3
Package for performing automated bio-image analysis tasks.
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