Code, analysis, and results for Hawley, Zhou, et al., Cancer Research, 2021.
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Updated
Mar 8, 2023 - HTML
Code, analysis, and results for Hawley, Zhou, et al., Cancer Research, 2021.
Nucleosome Dynamics wrappers for MuGVRE platform
ChromeBat: A Bio-Inspired Approach to 3D Genome Reconstruction
Pipeline to investigate multimorbidity of complex traits/phenotypes by integrating chromatin interaction and expression quantitative trait loci data.
Deep Learning of Sequence Patterns for CTCF-Mediated Chromatin Loop Formation
DeepLncCTCF for identification and analysis of consensus RNA motifs binding to the genome regulator CTCF
CBCR: A Curriculum Based Strategy For Chromosome Reconstruction
Processed data set of Miura et al., Nature Genetics, 2019
nuclear compartmentalization, 3D genome, nuclear bodies, MRF
Using Particle Swarm Algorithm for chromosome three-dimensional structure construction
Nextflow workflow for basic HiC data processing
A Web-Server implementation of ParticleChromo3D for 3D chromosome structure reconstruction
Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments
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