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Apr 23, 2019 - HTML
3d-genome
Here are 49 public repositories matching this topic...
Code, analysis, and results for Hawley, Zhou, et al., Cancer Research, 2021.
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Mar 8, 2023 - HTML
Deep Learning of Sequence Patterns for CTCF-Mediated Chromatin Loop Formation
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Aug 14, 2020 - Python
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Sep 21, 2018 - R
Nucleosome Dynamics wrappers for MuGVRE platform
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Apr 12, 2019 - Python
Transformer-based model to predict genome-wide chromosome spatial position
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May 26, 2023 - Python
DeepLncCTCF for identification and analysis of consensus RNA motifs binding to the genome regulator CTCF
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Aug 14, 2020 - Python
A Web-Server implementation of ParticleChromo3D for 3D chromosome structure reconstruction
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Feb 13, 2024 - Python
CBCR: A Curriculum Based Strategy For Chromosome Reconstruction
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Apr 16, 2021 - MATLAB
Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
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Mar 27, 2024 - Jupyter Notebook
ChromeBat: A Bio-Inspired Approach to 3D Genome Reconstruction
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Aug 28, 2021 - Python
Visual exploration of large genome interaction matrices with interactive small multiples.
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Dec 1, 2021 - JavaScript
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Jun 16, 2023 - Python
Nextflow workflow for basic HiC data processing
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Feb 14, 2024 - HTML
nuclear compartmentalization, 3D genome, nuclear bodies, MRF
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Dec 31, 2020 - Python
FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data
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Mar 8, 2022 - Python
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