Simple library/pipeline to generate and handle Hi-C data.
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Updated
May 30, 2024 - Python
Simple library/pipeline to generate and handle Hi-C data.
Metagenomic binning based on Hi-C data
Large genome reassembly based on Hi-C data, continuation of GRAAL
Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the int…
Simple 3C milling simulator with path generation module.
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
Tool for chromatin 3D structure reconstruction from 3C experimental data. Improvement of ShRec3D.
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