Tool for chromatin 3D structure reconstruction from 3C experimental data. Improvement of ShRec3D.
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Updated
Aug 21, 2017 - Python
Tool for chromatin 3D structure reconstruction from 3C experimental data. Improvement of ShRec3D.
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
Simple 3C milling simulator with path generation module.
Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the int…
Large genome reassembly based on Hi-C data, continuation of GRAAL
Metagenomic binning based on Hi-C data
Simple library/pipeline to generate and handle Hi-C data.
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