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convLSTM.py
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convLSTM.py
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"""
Reference: https://github.com/iwyoo/ConvLSTMCell-tensorflow
"""
import tensorflow as tf
from tensorflow.python.ops import array_ops
from tensorflow.python.ops import variable_scope as vs
from tensorflow.python.ops.math_ops import sigmoid
from tensorflow.python.ops.math_ops import tanh
from tensorflow.python.platform import tf_logging as logging
from tensorflow.python.ops import rnn_cell
from tensorflow.python.ops import init_ops
from tensorflow.python.ops.rnn_cell import LSTMStateTuple
from tensorflow.python.util import nest
# Future : Replace it with tensorflow.python.util.nest
import collections
import six
def _is_sequence(seq):
return (isinstance(seq, collections.Sequence)
and not isinstance(seq, six.string_types))
def ln(input, s, b, epsilon = 1e-5, max = 1000):
""" Layer normalizes a 4D tensor along its second axis, which corresponds to batch """
m, v = tf.nn.moments(input, [1,2,3], keep_dims=True) # for conv case ?
normalised_input = (input - m) / tf.sqrt(v + epsilon)
return normalised_input * s + b
class ConvGRUCell(rnn_cell.RNNCell):
"""Gated Recurrent Unit cell (cf. http://arxiv.org/abs/1406.1078)."""
def __init__(self, num_units, k_size=3, height=23, width=30, input_size=None, activation=tanh, initializer=None):
if input_size is not None:
logging.warn("%s: The input_size parameter is deprecated.", self)
self._num_units = num_units
self._activation = activation
self._initializer = initializer
self._k_size = k_size
self._height = height
self._width = width
@property
def state_size(self):
return self._num_units
@property
def output_size(self):
return self._num_units
def zero_state(self, batch_size=3, dtype=None):
return tf.zeros([batch_size, self._height, self._width, self._num_units])
def __call__(self, inputs, state, scope=None):
"""Gated recurrent unit (GRU) with nunits cells."""
with vs.variable_scope(scope or type(self).__name__): # "GRUCell"
with vs.variable_scope("Gates"): # Reset gate and update gate.
# We start with bias of 1.0 to not reset and not update.
r, u = array_ops.split(3, 2, _conv([inputs, state],
2 * self._num_units, self._k_size, True, initializer=self._initializer))
r, u = sigmoid(r), sigmoid(u)
with vs.variable_scope("Candidate"):
c = self._activation(_conv([inputs, r * state],
self._num_units, self._k_size, True, initializer=self._initializer))
new_h = u * state + (1 - u) * c
return new_h, new_h
class ConvLSTMCell(rnn_cell.RNNCell):
""" Convolutional LSTM network cell (ConvLSTM).
The implementation is based on http://arxiv.org/abs/1506.04214.
and BasicLSTMCell in TensorFlow.
https://github.com/tensorflow/tensorflow/blob/master/tensorflow/python/ops/rnn_cell.py
Future : Peephole connection will be added as the full LSTMCell
implementation of TensorFlow.
"""
def __init__(self, num_units, k_size=3, batch_size=4, height=23, width=30, input_size=None,
use_peepholes=False, cell_clip=None,
initializer=None, num_proj=None, proj_clip=None,
num_unit_shards=1, num_proj_shards=1,
forget_bias=1.0, state_is_tuple=False,
activation=tanh):
if not state_is_tuple:
logging.warn(
"%s: Using a concatenated state is slower and will soon be "
"deprecated. Use state_is_tuple=True." % self)
if input_size is not None:
logging.warn("%s: The input_size parameter is deprecated." % self)
#self._use_peepholes = use_peepholes
#self._cell_clip = cell_clip
#self._initializer = initializer
#self._num_proj = num_proj
#self._num_unit_shards = num_unit_shards
#self._num_proj_shards = num_proj_shards
self._num_units = num_units
self._forget_bias = forget_bias
self._state_is_tuple = state_is_tuple
self._activation = activation
self._initializer = initializer
self._k_size = k_size
self._height = height
self._width = width
self._batch_size = batch_size
@property
def state_size(self):
return (LSTMStateTuple(self._num_units, self._num_units)
if self._state_is_tuple else 2 * self._num_units)
@property
def output_size(self):
return self._num_units
def zero_state(self, batch_size=4, dtype=None):
return tf.zeros([batch_size, self._height, self._width, self._num_units*2])
def __call__(self, inputs, state, scope=None):
"""Convolutional Long short-term memory cell (ConvLSTM)."""
with vs.variable_scope(scope or type(self).__name__): # "ConvLSTMCell"
if self._state_is_tuple:
c, h = state
else:
c, h = array_ops.split(3, 2, state)
# batch_size * height * width * channel
concat = _conv([inputs, h], 4 * self._num_units, self._k_size, True, initializer=self._initializer)
# i = input_gate, j = new_input, f = forget_gate, o = output_gate
i, j, f, o = array_ops.split(3, 4, concat)
new_c = (c * sigmoid(f + self._forget_bias) + sigmoid(i) *
self._activation(j))
new_h = self._activation(new_c) * sigmoid(o)
if self._state_is_tuple:
new_state = LSTMStateTuple(new_c, new_h)
else:
new_state = array_ops.concat(3, [new_c, new_h])
return new_h, new_state
class LNConvLSTMCell(rnn_cell.RNNCell):
""" Convolutional LSTM network cell (ConvLSTM).
The implementation is based on http://arxiv.org/abs/1506.04214.
and BasicLSTMCell in TensorFlow.
https://github.com/tensorflow/tensorflow/blob/master/tensorflow/python/ops/rnn_cell.py
Future : Peephole connection will be added as the full LSTMCell
implementation of TensorFlow.
"""
def __init__(self, num_units, k_size=3, batch_size=4, height=23, width=30, input_size=None,
use_peepholes=False, cell_clip=None,
initializer=None, num_proj=None, proj_clip=None,
num_unit_shards=1, num_proj_shards=1,
forget_bias=1.0, state_is_tuple=False,
activation=tanh):
if not state_is_tuple:
logging.warn(
"%s: Using a concatenated state is slower and will soon be "
"deprecated. Use state_is_tuple=True." % self)
if input_size is not None:
logging.warn("%s: The input_size parameter is deprecated." % self)
#self._use_peepholes = use_peepholes
#self._cell_clip = cell_clip
#self._initializer = initializer
#self._num_proj = num_proj
#self._num_unit_shards = num_unit_shards
#self._num_proj_shards = num_proj_shards
self._num_units = num_units
self._forget_bias = forget_bias
self._state_is_tuple = state_is_tuple
self._activation = activation
self._initializer = initializer
self._k_size = k_size
self._height = height
self._width = width
self._batch_size = batch_size
@property
def state_size(self):
return (LSTMStateTuple(self._num_units, self._num_units)
if self._state_is_tuple else 2 * self._num_units)
@property
def output_size(self):
return self._num_units
def zero_state(self, batch_size=4, dtype=None):
return tf.zeros([batch_size, self._height, self._width, self._num_units*2])
def __call__(self, inputs, state, scope=None):
"""Convolutional Long short-term memory cell (ConvLSTM)."""
with vs.variable_scope(scope or type(self).__name__): # "ConvLSTMCell"
if self._state_is_tuple:
c, h = state
else:
c, h = array_ops.split(3, 2, state)
s1 = vs.get_variable("s1", initializer=tf.ones([self._height, self._width, 4 * self._num_units]), dtype=tf.float32)
s2 = vs.get_variable("s2", initializer=tf.ones([self._height, self._width, 4 * self._num_units]), dtype=tf.float32)
# s3 = vs.get_variable("s3", initializer=tf.ones([self._batch_size, self._num_units]), dtype=tf.float32)
b1 = vs.get_variable("b1", initializer=tf.zeros([self._height, self._width, 4 * self._num_units]), dtype=tf.float32)
b2 = vs.get_variable("b2", initializer=tf.zeros([self._height, self._width, 4 * self._num_units]), dtype=tf.float32)
# b3 = vs.get_variable("b3", initializer=tf.zeros([self._batch_size, self._num_units]), dtype=tf.float32)
input_below_ = _conv([inputs], 4 * self._num_units, self._k_size, False, initializer=self._initializer, scope="out_1")
input_below_ = ln(input_below_, s1, b1)
state_below_ = _conv([h], 4 * self._num_units, self._k_size, False, initializer=self._initializer, scope="out_2")
state_below_ = ln(state_below_, s2, b2)
lstm_matrix = tf.add(input_below_, state_below_)
i, j, f, o = array_ops.split(3, 4, lstm_matrix)
# batch_size * height * width * channel
# concat = _conv([inputs, h], 4 * self._num_units, self._k_size, True, initializer=self._initializer)
# i = input_gate, j = new_input, f = forget_gate, o = output_gate
# i, j, f, o = array_ops.split(3, 4, lstm_matrix)
new_c = (c * sigmoid(f + self._forget_bias) + sigmoid(i) *
self._activation(j))
new_h = self._activation(new_c) * sigmoid(o)
if self._state_is_tuple:
new_state = LSTMStateTuple(new_c, new_h)
else:
new_state = array_ops.concat(3, [new_c, new_h])
return new_h, new_state
class MultiRNNCell(rnn_cell.RNNCell):
def __init__(self, cells, state_is_tuple=False):
"""
Stacked convLSTM , modified from ops.rnn_cell MultiRNNCell
"""
if not cells:
raise ValueError("Must specify at least one cell for MultiRNNCell.")
self._cells = cells
self._state_is_tuple = state_is_tuple
self._num_units = cells[0].output_size
if not state_is_tuple:
if any(nest.is_sequence(c.state_size) for c in self._cells):
raise ValueError("Some cells return tuples of states, but the flag "
"state_is_tuple is not set. State sizes are: %s"
% str([c.state_size for c in self._cells]))
@property
def state_size(self):
if self._state_is_tuple:
return tuple(cell.state_size for cell in self._cells)
else:
return sum([cell.state_size for cell in self._cells])
@property
def output_size(self):
return self._cells[-1].output_size
def zero_state(self, batch_size=3, dtype=None, height=23, width=30):
if self._state_is_tuple:
return [tf.zeros(1, batch_size, height, width) for i in range(len(self._cells))]
else:
return tf.zeros([len(self._cells), batch_size, height, width, self._num_units*2])
def __call__(self, inputs, state, scope=None):
"""Run this multi-layer cell on inputs, starting from state."""
with vs.variable_scope(scope or type(self).__name__): # "MultiRNNCell"
cur_state_pos = 0
cur_inp = inputs
new_states = []
for i, cell in enumerate(self._cells):
with vs.variable_scope("Cell%d" % i):
if self._state_is_tuple:
if not nest.is_sequence(state):
raise ValueError(
"Expected state to be a tuple of length %d, but received: %s"
% (len(self.state_size), state))
cur_state = state[i]
else:
# print("STATE",state)
"""
cur_state = array_ops.slice(
state, [0, cur_state_pos], [-1, cell.state_size])
"""
cur_state = array_ops.unpack(state)[i]
# cur_state_pos += cell.state_size
cur_inp, new_state = cell(cur_inp, cur_state)
new_states.append(new_state)
"""
new_states = (tuple(new_states) if self._state_is_tuple
else array_ops.concat(1, new_states))
"""
new_states = array_ops.pack(new_states)
return cur_inp, new_states
def _conv(args, output_size, k_size, bias=True, bias_start=0.0, initializer=None, scope=None):
if args is None or (_is_sequence(args) and not args):
raise ValueError("`args` must be specified")
if not _is_sequence(args):
args = [args]
# Calculate the total size of arguments on dimension 3.
# (batch_size x height x width x arg_size)
total_arg_size = 0
shapes = [a.get_shape().as_list() for a in args]
height = shapes[0][1]
width = shapes[0][2]
for shape in shapes:
if len(shape) != 4:
raise ValueError("Conv is expecting 3D arguments: %s" % str(shapes))
if not shape[3]:
raise ValueError("Conv expects shape[3] of arguments: %s" % str(shapes))
if shape[1] == height and shape[2] == width:
total_arg_size += shape[3]
else :
raise ValueError("Inconsistent height and width size in arguments: %s" % str(shapes))
with vs.variable_scope(scope or "Conv"):
kernel = vs.get_variable("Kernel", [k_size, k_size, total_arg_size, output_size], initializer=initializer)
if len(args) == 1:
res = tf.nn.conv2d(args[0], kernel, [1, 1, 1, 1], padding='SAME')
else:
res = tf.nn.conv2d(array_ops.concat(3, args), kernel, [1, 1, 1, 1], padding='SAME')
if not bias: return res
bias_term = vs.get_variable( "Bias", [output_size],
initializer=init_ops.constant_initializer(bias_start))
return res + bias_term